Basic Information
Locus ID:
Pt_Chr0401298
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Cid1 family poly A polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 37696819 | 37707178 | + | Pt_Chr0401298 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 174,311.61 Da | 54.48 | 79.88 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 1219 | 1329 | 5.22775E-12 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 1221 | 1263 | 3.9E-7 | IPR002934 |
| Pfam | PF03828 | Cid1 family poly A polymerase | 1461 | 1513 | 4.3E-6 | IPR002058 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 1409 | 1541 | 3.66E-27 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 1191 | 1406 | 2.94E-21 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 1190 | 1206 | 1.4E-14 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 1207 | 1319 | 1.4E-14 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 1365 | 1563 | 9.3E-47 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1345 | 1366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 977 | 1004 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 459 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00060.1 | Nucleotidyltransferase family protein. | 0 |
| RefSeq | XP_051198442.1 | uncharacterized protein LOC127312005 [Lolium perenne] | 0 |
| Q7KVS9 | Non-canonical poly(A) RNA polymerase protein Trf4-1 OS=Drosophila melanogaster OX=7227 GN=Trf4-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I7BFF5 | NTP_transf_2 domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26802 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1323 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29245, Sbi_jg3484 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6479 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000236 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11337, Sgl16726 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000013338, gene:ENSEOMG00000050030 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0006570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30002450 |
| Apiaceae | Apium graveolens | 1 | Ag10G00285 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G007610, COCNU_09G003120 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710741, gene-LOC103712263 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.203.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G12240 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G00060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028362m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g041960.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1124 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1144 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g02280 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04890 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.140 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014955 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31247 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2621, BH06.2424, CH06.2710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0736950.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036219 |
| Poaceae | Oryza coarctata | 2 | Oco11G014920, Oco12G015090 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g45800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G222900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103209, Pt_Chr0401298 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G019970, Chr11G002690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G797400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG058740, gene_TRIDC7AG065730 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G471100.1, TraesCS7B02G373100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb274180_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40526, nbis-gene-9794 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30970, Zma_g33230 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.2438 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g11570, gene.Posoc07g04340 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1537 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-8389, nbisL1-mrna-8635 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20250 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15150 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.103 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003131 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22743 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645746 |
| Solanaceae | Solanum chilense | 1 | SOLCI005933700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005675 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_850 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2616 |
| Zosteraceae | Zostera marina | 1 | Zosma06g03730.v3.1 |