Basic Information
Locus ID:
Pt_Chr0401247
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 35884362 | 35889370 | - | Pt_Chr0401247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 53,154.43 Da | 62.80 | 84.52 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 240 | 288 | 1.75317E-15 | - |
| Pfam | PF12906 | RING-variant domain | 240 | 287 | 1.5E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 236 | 291 | 2.27E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 227 | 295 | 8.5E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 239 | 288 | 3.4E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 232 | 294 | 19.299625 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 100 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051198546.1 | uncharacterized protein LOC127312132 isoform X1 [Lolium perenne] | 0 |
| TrEMBL | I1GW50 | RING-CH-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=BRADI_1g32600v3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology