Basic Information
Locus ID:
Pt_Chr0401115
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 31387011 | 31390096 | + | Pt_Chr0401115 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 55,109.81 Da | 41.30 | 72.89 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 13 | 51 | 2.1E-11 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 82 | 2.88E-16 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 54 | 2.3E-10 | - |
| SMART | SM00256 | fbox_2 | 15 | 55 | 2.4E-10 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 9 | 55 | 12.199898 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49610.1 | F-box family protein. | 0 |
| RefSeq | XP_051201708.1 | F-box protein At5g49610-like [Lolium perenne] | 0 |
| TrEMBL | A0A2T7DWD3 | F-box domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G078900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_035428, gene-QYE76_035432, gene-QYE76_049662 |
| Poaceae | Oryza coarctata | 1 | Oco06G012710 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g23040.1, LOC_Os05g14290.1 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204291, Pt_Chr0204295, Pt_Chr0401115 |