halophFGD

Basic Information

Locus ID: Pt_Chr0400931

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: Belongs to the glycosyl hydrolase 13 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr04	26425846	26433587	+	Pt_Chr0400931

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.34	49,007.14 Da	29.04	84.70	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd11314	AmyAc_arch_bac_plant_AmyA	36	387	4.63999E-164	-
Pfam	PF07821	Alpha-amylase C-terminal beta-sheet domain	378	436	1.0E-14	IPR012850
Pfam	PF00128	Alpha amylase, catalytic domain	59	357	6.0E-16	IPR006047
SUPERFAMILY	SSF51445	(Trans)glycosidases	34	377	5.37E-72	IPR017853
SUPERFAMILY	SSF51011	Glycosyl hydrolase domain	381	437	2.41E-16	-
Gene3D	G3DSA:2.60.40.1180	-	381	438	1.1E-21	IPR013780
Gene3D	G3DSA:3.20.20.80	Glycosidases	35	380	4.0E-152	-
SMART	SM00810	alpha-amyl_c2	377	437	6.6E-31	IPR012850
SMART	SM00642	aamy	35	376	1.0E-52	IPR006047
PIRSF	PIRSF001028	Alpha-amylase_plant	9	438	1.4E-213	IPR013775

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0004556 (alpha-amylase activity) GO:0005509 (calcium ion binding)

KEGG Pathway

KO Term:

K01176 (alpha-amylase [EC:3.2.1.1])

Pathway:

ko00500 (Starch and sucrose metabolism) map00500 (Starch and sucrose metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Reaction:

R02108 (Starch + H2O <=> Dextrin + Starch) R02112 (Starch <=> Dextrin + Maltose) R11262 (Maltodextrin + H2O <=> Maltose)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G25000.1	alpha-amylase-like. Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).
RefSeq	XP_047085685.1	alpha-amylase type A isozyme [Lolium rigidum]
Swiss-Prot	P00693	Alpha-amylase type A isozyme OS=Hordeum vulgare OX=4513 GN=AMY1.1 PE=1 SV=1
TrEMBL	A0A8I6YKF6	Alpha-amylase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg11975
Aizoaceae	Mesembryanthemum crystallinum	8	gene_17112, gene_17902, gene_18983, gene_18984, gene_20013 ... gene_25146, gene_26707, gene_4577
Amaranthaceae	Atriplex hortensis	8	Ah009601, Ah009602, Ah009611, Ah017759, Ah017761, Ah017762 ... Ah038513, Ah038516
Amaranthaceae	Beta vulgaris	4	BVRB_9g213260, BVRB_9g213270, BVRB_9g213280, BVRB_9g213370
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg12301, Sbi_jg47289, Sbi_jg47292
Amaranthaceae	Salicornia europaea	2	Seu_jg21560, Seu_jg21562
Amaranthaceae	Suaeda glauca	2	Sgl55525, Sgl60745
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000008859, gene:ENSEOMG00000013627 ... gene:ENSEOMG00000016560, gene:ENSEOMG00000019470, gene:ENSEOMG00000030592, gene:ENSEOMG00000036495, gene:ENSEOMG00000038498, gene:ENSEOMG00000038898, gene:ENSEOMG00000044194, gene:ENSEOMG00000050027, gene:ENSEOMG00000052094, gene:ENSEOMG00000052627
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.7BG0002320, CQ.Regalona.r1.7BG0002330 ... CQ.Regalona.r1.7BG0002400, CQ.Regalona.r1.8BG0003100, CQ.Regalona.r1.9AG0022270, CQ.Regalona.r1.9AG0022330, CQ.Regalona.r1.9AG0022340
Anacardiaceae	Pistacia vera	1	pistato.v30045260
Apiaceae	Apium graveolens	1	Ag5G02491
Arecaceae	Cocos nucifera	2	scaffold000431G000020, scaffold000431G000030
Arecaceae	Phoenix dactylifera	4	gene-LOC103722582, gene-LOC103722583, gene-LOC120104902 ... gene-LOC120104903
Asparagaceae	Asparagus officinalis	1	AsparagusV1_06.1812.V1.1
Asteraceae	Flaveria trinervia	1	Ftri16G22637
Brassicaceae	Arabidopsis thaliana	1	AT4G25000.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10025232m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g23000.v2.2
Brassicaceae	Brassica nigra	2	BniB05g012250.2N, BniB05g021450.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G2110, Ceq07G2147
Casuarinaceae	Casuarina glauca	3	Cgl03G2251, Cgl07G2375, Cgl07G2376
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1267
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2122, evm.TU.LG06.435
Plantaginaceae	Plantago ovata	1	Pov_00027632
Plumbaginaceae	Limonium bicolor	5	Lb2G12055, Lb2G12058, Lb4G21549, Lb7G35566, Lb7G35567
Poaceae	Echinochloa crus-galli	29	AH02.2502, AH03.2166, AH03.2167, AH06.2731, AH06.2968 ... AH07.3596, AH08.1805, AH08.1809, BH02.2600, BH03.2226, BH03.2227, BH03.2228, BH03.2229, BH03.2230, BH03.2258, BH03.2259, BH06.2529, BH06.2750, BH07.3404, BH08.1895, BH08.1896, BH09.2990, CH02.2829, CH03.2495, CH03.2496, CH06.2828, CH06.3094, CH07.3479, CH08.2070
Poaceae	Eleusine coracana subsp. coracana	19	gene-QOZ80_2AG0146880, gene-QOZ80_2AG0146890 ... gene-QOZ80_2BG0202380, gene-QOZ80_3AG0249460, gene-QOZ80_3BG0278720, gene-QOZ80_6AG0527430, gene-QOZ80_6AG0537550, gene-QOZ80_6AG0537560, gene-QOZ80_6AG0550700, gene-QOZ80_6BG0481390, gene-QOZ80_6BG0490780, gene-QOZ80_6BG0490790, gene-QOZ80_6BG0504260, gene-QOZ80_8AG0626420, gene-QOZ80_8AG0634180, gene-QOZ80_8AG0634190, gene-QOZ80_8BG0655500, gene-QOZ80_8BG0663180, gene-QOZ80_8BG0663200
Poaceae	Hordeum vulgare	12	HORVU.MOREX.r3.5HG0486500.1, HORVU.MOREX.r3.6HG0617430.1 ... HORVU.MOREX.r3.6HG0617450.1, HORVU.MOREX.r3.6HG0617470.1, HORVU.MOREX.r3.6HG0617480.1, HORVU.MOREX.r3.6HG0617490.1, HORVU.MOREX.r3.6HG0617500.1, HORVU.MOREX.r3.6HG0617510.1, HORVU.MOREX.r3.6HG0619750.1, HORVU.MOREX.r3.7HG0721060.1, HORVU.MOREX.r3.7HG0721200.1, HORVU.MOREX.r3.7HG0721210.1
Poaceae	Lolium multiflorum	8	gene-QYE76_005697, gene-QYE76_005699, gene-QYE76_025612 ... gene-QYE76_025615, gene-QYE76_031148, gene-QYE76_055969, gene-QYE76_055974, gene-QYE76_056101
Poaceae	Oryza coarctata	11	Oco03G022560, Oco04G023220, Oco12G017370, Oco15G012800 ... Oco16G009690, Oco16G009730, Oco17G006530, Oco17G006540, Oco17G006550, Oco18G006760, Oco18G006770
Poaceae	Oryza sativa	7	LOC_Os02g52700.1, LOC_Os02g52710.1, LOC_Os06g49970.2 ... LOC_Os08g36900.1, LOC_Os08g36910.1, LOC_Os09g28400.1, LOC_Os09g28420.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G178100, gene-BS78_02G204300, gene-BS78_K053500 ... gene-BS78_02G204400, gene-BS78_07G164400, gene-BS78_10G275900, gene-BS78_K318400
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0104496, Pt_Chr0104497, Pt_Chr0203158, Pt_Chr0203159 ... Pt_Chr0400930, Pt_Chr0400931, Pt_Chr0401010, Pt_Chr0401011
Poaceae	Sporobolus alterniflorus	10	Chr02G033240, Chr05G000580, Chr09G019110, Chr13G003340 ... Chr13G003350, Chr14G015190, Chr17G015070, Chr29G003980, Chr29G003990, Chr29G007370
Poaceae	Thinopyrum elongatum	9	Tel4E01G479600, Tel5E01G385800, Tel5E01G386100 ... Tel5E01G386200, Tel5E01G734800, Tel6E01G566700, Tel6E01G567100, Tel6E01G588600, Tel7E01G650200
Poaceae	Triticum dicoccoides	18	gene_TRIDC4BG049100, gene_TRIDC5AG037650 ... gene_TRIDC5AG066560, gene_TRIDC5BG039760, gene_TRIDC5BG071480, gene_TRIDC5BG071520, gene_TRIDC6AG047990, gene_TRIDC6AG049900, gene_TRIDC6AG049910, gene_TRIDC6BG055940, gene_TRIDC6BG055970, gene_TRIDC6BG055980, gene_TRIDC6BG058390, gene_TRIDC6BG058410, gene_TRIDC7AG053480, gene_TRIDC7BG046090, gene_TRIDC7BG046100, gene_TRIDC7BG046190
Poaceae	Triticum aestivum	30	TraesCS4B02G285400.1, TraesCS4B02G285600.1 ... TraesCS4D02G284400.1, TraesCS5A02G238100.1, TraesCS5A02G464500.1, TraesCS5B02G236600.1, TraesCS5B02G475700.1, TraesCS5B02G476000.1, TraesCS5D02G245000.1, TraesCS5D02G477100.1, TraesCS6A02G319300.1, TraesCS6A02G334100.1, TraesCS6A02G334200.1, TraesCS6B02G349500.1, TraesCS6B02G349700.1, TraesCS6B02G349800.1, TraesCS6B02G364800.1, TraesCS6B02G364900.1, TraesCS6D02G298500.1, TraesCS6D02G313300.1, TraesCS6D02G313500.1, TraesCS7A02G383200.1, TraesCS7A02G383900.1, TraesCS7A02G384000.1, TraesCS7B02G286000.1, TraesCS7B02G286100.1, TraesCS7B02G286700.1, TraesCS7D02G379700.1, TraesCS7D02G380400.1, TraesCS7D02G380500.1
Poaceae	Zea mays	5	Zm00001eb038060_P001, Zm00001eb100790_P001 ... Zm00001eb255870_P001, Zm00001eb311720_P001, Zm00001eb311730_P001
Poaceae	Zoysia japonica	11	nbis-gene-17202, nbis-gene-17204, nbis-gene-19668 ... nbis-gene-21725, nbis-gene-30611, nbis-gene-40766, nbis-gene-43289, nbis-gene-55854, nbis-gene-8607, nbis-gene-8608, nbis-gene-9576
Poaceae	Zoysia macrostachya	8	Zma_g14498, Zma_g17213, Zma_g22841, Zma_g24217, Zma_g24218 ... Zma_g30441, Zma_g32668, Zma_g33401
Portulacaceae	Portulaca oleracea	13	evm.TU.LG01.549, evm.TU.LG02.710, evm.TU.LG02.712 ... evm.TU.LG04.214, evm.TU.LG05.441, evm.TU.LG05.442, evm.TU.LG05.60, evm.TU.LG09.1881, evm.TU.LG09.1883, evm.TU.LG10.80, evm.TU.LG17.75, evm.TU.LG25.1273, evm.TU.LG25.880
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g30550
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_8_RagTag.954
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-8869
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-20664, nbisL1-mrna-20665
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000018l.301
Rhizophoraceae	Kandelia obovata	1	Maker00003502
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-11424
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-23829
Salicaceae	Populus euphratica	1	populus_peu31978
Solanaceae	Lycium barbarum	2	gene-LOC132627863, gene-LOC132627865
Solanaceae	Solanum chilense	2	SOLCI002762200, SOLCI004793700
Solanaceae	Solanum pennellii	1	gene-LOC107013022
Tamaricaceae	Reaumuria soongarica	4	gene_10148, gene_10149, gene_10944, gene_8015
Tamaricaceae	Tamarix chinensis	1	TC08G2210