Basic Information
Locus ID:
Pt_Chr0400921
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
MINDY deubiquitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 26037558 | 26043707 | - | Pt_Chr0400921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.34 | 87,707.44 Da | 53.27 | 73.03 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04424 | MINDY deubiquitinase | 64 | 185 | 7.4E-34 | IPR033979 |
| SMART | SM00726 | uim | 251 | 270 | 4.5 | IPR003903 |
| SMART | SM00726 | uim | 295 | 314 | 4.5 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 251 | 270 | 8.830677 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 295 | 314 | 8.830677 | IPR003903 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 802 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 772 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 438 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11860.1 | Protein of unknown function (DUF544) . | 0 |
| RefSeq | XP_051199400.1 | uncharacterized protein LOC127312903 isoform X1 [Lolium perenne] | 0 |
| Q76LS9 | Ubiquitin carboxyl-terminal hydrolase MINDY-1 OS=Mus musculus OX=10090 GN=Mindy1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453SLR8 | MINDY_DUB domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23408, jg37177, jg37178, jg37179 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1883 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003727, Ah010093 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g101240 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23666, Sbi_jg7515 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12522 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001292, GOSA_00001293 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51872, Sgl57168 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007911, gene:ENSEOMG00000022849 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0008480, CQ.Regalona.r1.5BG0008740 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30092260 |
| Apiaceae | Apium graveolens | 1 | Ag6G01788 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G005170, scaffold015050G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698954, gene-LOC103710635 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.2251.V1.1, AsparagusV1_Unassigned.943.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G19974, Ftri7G11475, FtriNA25103 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G11860.1, AT4G22960.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027519m.g.v1.0, Thhalv10028490m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g05610.v2.2, Sp7g21050.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g014190.2N, BniB08g036960.2N, BniB08g049600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0482 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0592 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno12g04570, gene.Cymno16g04580, gene.Cymno16g04590 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0994s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g10930, gene.Thate05g01440, gene.Thate07g00600 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1321 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001122, Pov_00029022 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24186 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2959, BH06.2742, CH06.3084 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0550610, gene-QOZ80_6BG0504140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0725220.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_035315 |
| Poaceae | Oryza coarctata | 2 | Oco11G017070, Oco12G017260 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g49800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G275000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400921, Pt_Chr0400997 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G021940, Chr11G000580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G677700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG056550, gene_TRIDC7BG049100 |
| Poaceae | Triticum aestivum | 4 | TraesCS5D02G032000.4, TraesCS7A02G406200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb227790_P001, Zm00001eb272510_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40751, nbis-gene-9586 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g31126, Zma_g33394 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3455, evm.TU.LG10.275, evm.TU.LG16.131 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g18120, gene.Posoc09g03710 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_14_RagTag.253, evm.TU.Scaffold_14_RagTag.254 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18128, nbisL1-mrna-22483 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3429, nbisL1-mrna-4053 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20273, nbisL1-mrna-23077, nbisL1-mrna-8459 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.217, evm.TU.utg000022l.349 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014360, Maker00018662 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16086, nbisL1-mrna-3490 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10829, nbisL1-mrna-6634 |
| Salicaceae | Populus euphratica | 2 | populus_peu03483, populus_peu34323 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634990 |
| Solanaceae | Solanum chilense | 1 | SOLCI007116200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028996 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15004 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G4556, TC02G0033 |
| Zosteraceae | Zostera marina | 1 | Zosma05g00250.v3.1 |