Basic Information
Locus ID:
Pt_Chr0400902
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 25625856 | 25629004 | - | Pt_Chr0400902 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 48,359.38 Da | 46.45 | 102.25 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 229 | 393 | 2.43E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 84 | 126 | 2.62E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 87 | 124 | 3.8E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 151 | 411 | 4.7E-6 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 83 | 130 | 8.967582 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044392196.1 | F-box/LRR-repeat protein At5g02910-like [Triticum aestivum] | 0 |
| TrEMBL | A0A8I7B9F4 | F-box domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0493120.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_064665, gene-QYE76_064666 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400902, Pt_Chr0400975 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G424700.1, TraesCS1D02G433000.1.cds1 ... |