Basic Information
Locus ID:
Pt_Chr0400680
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
EBF1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 19592481 | 19595649 | + | Pt_Chr0400680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 67,881.20 Da | 44.30 | 109.86 | 0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 217 | 240 | 0.0011 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 269 | 291 | 1.2 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 481 | 503 | 1.2 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 341 | 600 | 1.84E-38 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 165 | 414 | 1.71E-26 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 508 | 634 | 2.7E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 257 | 449 | 3.7E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 139 | 256 | 2.4E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 450 | 507 | 1.2E-9 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 455 | 480 | 1.2 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 561 | 585 | 28.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 535 | 560 | 0.002 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 508 | 533 | 7.3 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 217 | 242 | 2.9E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 349 | 374 | 31.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 243 | 268 | 0.11 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 375 | 400 | 0.088 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 481 | 506 | 0.024 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 269 | 294 | 3.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 191 | 216 | 0.0055 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 401 | 426 | 680.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 146 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_044444967.1 | EIN3-binding F-box protein 1-like [Triticum aestivum] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453SFM1 | F-box domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology