Basic Information
Locus ID:
Pt_Chr0400470
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
phosphatase 2A 55 kDa regulatory subunit B'
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 13188605 | 13195855 | + | Pt_Chr0400470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 58,919.84 Da | 45.58 | 71.32 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 336 | 379 | 0.04 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 235 | 271 | 0.15 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 49 | 516 | 7.48E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 46 | 202 | 5.0E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 224 | 518 | 5.9E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 329 | 379 | 44.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 41 | 76 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 232 | 271 | 0.74 | IPR001680 |
| SMART | SM00320 | WD40_4 | 115 | 155 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 322 | 7.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 437 | 460.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 19 | 524 | 1.5E-197 | IPR000009 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 241 | 255 | - | IPR018067 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 115 | 129 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 328 | 355 | 3.3E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 410 | 436 | 3.3E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 131 | 159 | 3.3E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 493 | 522 | 3.3E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 55 | 75 | 3.3E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 299 | 327 | 3.3E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 243 | 270 | 3.3E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 271 | 298 | 3.3E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 356 | 383 | 3.3E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 102 | 130 | 3.3E-159 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 384 | 409 | 3.3E-159 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 193 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_044437818.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform [Triticum aestivum] | 0 |
| Q5Z8Z7 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0563300 PE=2 SV=2 | 0 | |
| TrEMBL | A0A453SCZ5 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology