Basic Information
Locus ID:
Pt_Chr0400442
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 12290045 | 12296046 | - | Pt_Chr0400442 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 83,920.00 Da | 44.44 | 82.08 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 42 | 155 | 2.37637E-28 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 76 | 149 | 1.9E-7 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 410 | 483 | 9.3E-6 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 6 | 347 | 2.1E-105 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 349 | 409 | 1.3E-10 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 348 | 475 | 1.12E-36 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 5 | 195 | 5.45E-47 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 198 | 347 | 1.41E-63 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 349 | 465 | 4.6E-27 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 35 | 191 | 2.6E-152 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 6 | 345 | 2.6E-152 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 588 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 588 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 508 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_048540894.1 | nuclear poly(A) polymerase 4-like isoform X2 [Triticum urartu] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7V864 | polynucleotide adenylyltransferase OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology