Basic Information
Locus ID:
Pt_Chr0400355
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 9773420 | 9803656 | + | Pt_Chr0400355 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 159,540.81 Da | 47.56 | 85.41 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 1017 | 1052 | 0.0031 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1017 | 1113 | 4.32E-8 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 404 | 463 | 8.76E-8 | IPR036047 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 581 | 968 | 8.24E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044398573.1 | uncharacterized protein LOC123122435 [Triticum aestivum] | 0 |
| TrEMBL | A0A453LI01 | F-box domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0101289, Pt_Chr0400355 |