Basic Information
Locus ID:
Pt_Chr0400350
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 9704471 | 9710125 | - | Pt_Chr0400350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.35 | 173,214.30 Da | 36.72 | 99.26 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 136 | 195 | 1.4E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 82 | 1.9E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 352 | 412 | 1.4E-6 | IPR001611 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 644 | 685 | 2.8E-6 | IPR025875 |
| Pfam | PF13041 | PPR repeat family | 1316 | 1363 | 5.6E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 1418 | 1465 | 1.3E-8 | IPR002885 |
| Pfam | PF00069 | Protein kinase domain | 782 | 1049 | 1.4E-37 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 500 | 556 | 6.8E-8 | IPR001611 |
| Pfam | PF01535 | PPR repeat | 1494 | 1518 | 0.028 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1153 | 1182 | 0.7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 1256 | 1280 | 7.8E-4 | IPR002885 |
| SUPERFAMILY | SSF52058 | L domain-like | 67 | 334 | 2.24E-51 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 759 | 1055 | 1.78E-68 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 302 | 594 | 3.91E-51 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 593 | 678 | 2.52E-16 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1390 | 1603 | 3.8E-44 | IPR011990 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 198 | 253 | 3.3E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 468 | 685 | 3.3E-48 | IPR032675 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1094 | 1253 | 1.4E-15 | IPR011990 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 254 | 467 | 9.9E-59 | IPR032675 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1254 | 1389 | 1.4E-32 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 861 | 1067 | 2.8E-44 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 197 | 1.3E-41 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 744 | 859 | 4.9E-29 | - |
| SMART | SM00369 | LRR_typ_2 | 399 | 423 | 83.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 639 | 662 | 410.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 351 | 374 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 158 | 181 | 61.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 567 | 591 | 84.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 182 | 206 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 109 | 133 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 663 | 691 | 380.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 375 | 398 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 543 | 566 | 5.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 230 | 254 | 280.0 | IPR003591 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1256 | 1280 | 9.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1318 | 1352 | 5.0E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1287 | 1318 | 4.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1456 | 1491 | 3.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1422 | 1455 | 2.4E-6 | IPR002885 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 781 | 1068 | 35.594372 | IPR000719 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1419 | 1453 | 11.4875 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1254 | 1284 | 8.845827 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1316 | 1350 | 13.054966 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1285 | 1315 | 9.96388 | IPR002885 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 905 | 917 | - | IPR008266 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 787 | 809 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15300.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_051208460.1 | probable leucine-rich repeat receptor-like protein kinase At1g35710 [Lolium perenne] | 0 |
| Q9LXF2 | Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E40 PE=2 SV=2 | 0 | |
| TrEMBL | F2DYS7 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40248 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17310 |
| Apiaceae | Apium graveolens | 1 | Ag9G00512 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G005640 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698129, gene-LOC103705230 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1676.V1.1, AsparagusV1_08.2249.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G29278 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G15300.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015396m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g28770.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g047570.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0301 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0247 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g03450 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10276 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.215 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023553, Pov_00023554 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02185 |
| Poaceae | Echinochloa crus-galli | 4 | AH06.918, BH01.4781, BH06.950, CH01.5425 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0235190, gene-QOZ80_3BG0292930 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0403200.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028919, gene-QYE76_070499 |
| Poaceae | Oryza coarctata | 4 | Oco05G003990, Oco06G004060, Oco11G005960, Oco12G006000 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g07234.1, LOC_Os06g12510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G467500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400350 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G036280, Chr0G008330, Chr12G003170, Chr14G004460 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G478100, Tel7E01G348900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG002620, gene_TRIDC4BG048960 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G019500.1.cds1, TraesCS4B02G284600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb402420_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2789, nbis-gene-51389 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1989, Zma_g29398 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g28170 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15155 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-733 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-248 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.67 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007133 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21441 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17318 |
| Salicaceae | Populus euphratica | 1 | populus_peu00672 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623484 |
| Solanaceae | Solanum chilense | 1 | SOLCI007491700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011981 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7291 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1296 |
| Zosteraceae | Zostera marina | 1 | Zosma01g04840.v3.1 |