Basic Information
Locus ID:
Pt_Chr0400180
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 5456509 | 5457144 | - | Pt_Chr0400180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 22,051.64 Da | 54.21 | 105.55 | 0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 148 | 190 | 9.02738E-18 | - |
| Pfam | PF13639 | Ring finger domain | 148 | 190 | 1.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 196 | 4.42E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 196 | 1.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 148 | 189 | 4.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 190 | 12.666314 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09100.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051201959.1 | E3 ubiquitin-protein ligase Os03g0188200-like [Lolium perenne] | 0 |
| Q9M0R7 | RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453S5Z7 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology