Basic Information
Locus ID:
Pt_Chr0400163
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 4956786 | 4979100 | - | Pt_Chr0400163 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 90,506.97 Da | 61.92 | 88.82 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 507 | 550 | 7.55493E-17 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 342 | 385 | 6.96949E-20 | - |
| CDD | cd16461 | RING-H2_EL5_like | 773 | 816 | 2.24011E-14 | - |
| Pfam | PF13639 | Ring finger domain | 507 | 550 | 3.1E-11 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 342 | 385 | 6.9E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 773 | 816 | 2.3E-11 | IPR001841 |
| Pfam | PF17123 | RING-like zinc finger | 651 | 679 | 2.3E-9 | IPR001841 |
| Pfam | PF17123 | RING-like zinc finger | 203 | 231 | 1.2E-8 | IPR001841 |
| Pfam | PF00025 | ADP-ribosylation factor family | 4 | 107 | 5.9E-22 | IPR006689 |
| SUPERFAMILY | SSF57850 | RING/U-box | 646 | 688 | 4.71E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 199 | 241 | 5.65E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 336 | 391 | 1.87E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 503 | 556 | 1.51E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 773 | 822 | 2.12E-17 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 4 | 110 | 6.69E-16 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 485 | 557 | 2.3E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 181 | 285 | 1.5E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 757 | 824 | 1.1E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 610 | 690 | 3.9E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 321 | 391 | 2.9E-20 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 108 | 8.6E-31 | IPR027417 |
| SMART | SM00184 | ring_2 | 651 | 698 | 0.17 | IPR001841 |
| SMART | SM00184 | ring_2 | 508 | 549 | 1.9E-6 | IPR001841 |
| SMART | SM00178 | sar_sub_1 | 1 | 107 | 9.1E-12 | IPR006689 |
| SMART | SM00184 | ring_2 | 774 | 815 | 9.3E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 343 | 384 | 3.0E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 203 | 279 | 0.01 | IPR001841 |
| ProSiteProfiles | PS51422 | small GTPase SAR1 family profile. | 1 | 107 | 13.032436 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 508 | 550 | 11.441815 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 774 | 816 | 11.604098 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 343 | 385 | 11.397556 | IPR001841 |
| PRINTS | PR00328 | GTP-binding SAR1 protein signature | 38 | 59 | 6.8E-21 | IPR006689 |
| PRINTS | PR00328 | GTP-binding SAR1 protein signature | 81 | 105 | 6.8E-21 | IPR006689 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 469 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02620.1 | Ras-related small GTP-binding family protein. | 0 |
| RefSeq | XP_047051023.1 | RING-H2 finger protein ATL39-like [Lolium rigidum] | 0 |
| O04834 | Small COPII coat GTPase SAR1A OS=Arabidopsis thaliana OX=3702 GN=SAR1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D3GHH9 | RING-type domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology