Basic Information
Locus ID:
Pt_Chr0400153
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 4725607 | 4726125 | - | Pt_Chr0400153 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 18,566.72 Da | 63.16 | 109.48 | 0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 108 | 151 | 8.64122E-17 | - |
| Pfam | PF13639 | Ring finger domain | 107 | 151 | 1.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 103 | 156 | 8.58E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 159 | 6.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 109 | 150 | 3.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 109 | 151 | 11.618851 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047074980.1 | RING-H2 finger protein ATL39-like [Lolium rigidum] | 0 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 0 | |
| TrEMBL | A0A3B6TZR9 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.1890, BH06.1735 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0541980, gene-QOZ80_6BG0495190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709440.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_034091, gene-QYE76_042759 |
| Poaceae | Oryza coarctata | 3 | Oco03G006760, Oco04G007030, Oco11G010420 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g14990.1, LOC_Os06g34470.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G155300, gene-BS78_10G155400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400153, Pt_Chr0400167 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G015750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G571100 |
| Poaceae | Triticum aestivum | 5 | TraesCS7A02G347700.1, TraesCS7A02G563700.1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10265, nbis-gene-10276 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30667, Zma_g30671 |