halophFGD

Basic Information

Locus ID: Pt_Chr0400152

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: RING-like zinc finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr04	4694505	4715097	-	Pt_Chr0400152

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.63	65,412.34 Da	46.28	76.66	-0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16461	RING-H2_EL5_like	266	309	1.22234E-16	-
CDD	cd16454	RING-H2_PA-TM-RING	555	598	2.27976E-18	-
CDD	cd16461	RING-H2_EL5_like	131	174	1.22234E-16	-
Pfam	PF13639	Ring finger domain	555	598	1.8E-11	IPR001841
Pfam	PF13639	Ring finger domain	266	309	2.6E-11	IPR001841
Pfam	PF13639	Ring finger domain	131	174	1.5E-11	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	126	181	7.61E-20	-
SUPERFAMILY	SSF57850	RING/U-box	551	604	5.71E-19	-
SUPERFAMILY	SSF57850	RING/U-box	259	315	1.8E-19	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	105	183	1.6E-19	IPR013083
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	235	315	4.0E-20	IPR013083
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	525	606	1.6E-19	IPR013083
SMART	SM00184	ring_2	132	173	4.3E-6	IPR001841
SMART	SM00184	ring_2	267	308	1.1E-5	IPR001841
SMART	SM00184	ring_2	556	597	2.3E-6	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	132	174	11.486073	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	556	598	11.530333	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	267	309	11.530333	IPR001841
MobiDBLite	mobidb-lite	consensus disorder prediction	335	354	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT4G40070.1	RING/U-box superfamily protein.
RefSeq	XP_047074412.1	RING-H2 finger protein ATL39-like [Lolium rigidum]
Swiss-Prot	Q8W571	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3
TrEMBL	A0A0D3GHH9	RING-type domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg1301, jg15378, jg24386, jg24387
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10996, gene_21116
Amaranthaceae	Atriplex hortensis	3	Ah011962, Ah012853, Ah015263
Amaranthaceae	Beta vulgaris	1	BVRB_9g209190
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg8487, Sbi_m1-g13917
Amaranthaceae	Salicornia europaea	1	Seu_jg296
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008346, GOSA_00014692
Amaranthaceae	Suaeda glauca	7	Sgl11463, Sgl16859, Sgl24618, Sgl29771, Sgl42850, Sgl47611 ... Sgl47636
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000015589, gene:ENSEOMG00000034012 ... gene:ENSEOMG00000036303, gene:ENSEOMG00000047651, gene:ENSEOMG00000051638
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2BG0021650, CQ.Regalona.r1.3AG0019810 ... CQ.Regalona.r1.4BG0009270, CQ.Regalona.r1.8AG0015330, CQ.Regalona.r1.8BG0016590, CQ.Regalona.r1.9AG0009470, CQ.Regalona.r1.9BG0013880
Anacardiaceae	Pistacia vera	4	pistato.v30117910, pistato.v30119790, pistato.v30175210 ... pistato.v30271100
Apiaceae	Apium graveolens	6	Ag10G01430, Ag4G01558, Ag4G02079, Ag5G01538, Ag8G00529 ... Ag9G02655
Arecaceae	Cocos nucifera	6	COCNU_02G002820, COCNU_03G013390, COCNU_03G013430 ... COCNU_04G015110, COCNU_16G007740, contig69254450G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103703132, gene-LOC103703583, gene-LOC103707379 ... gene-LOC103716529, gene-LOC103723035
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.1723.V1.1, AsparagusV1_08.151.V1.1 ... AsparagusV1_08.3472.V1.1
Asteraceae	Flaveria trinervia	5	Ftri11G08184, Ftri11G22191, Ftri17G31117, Ftri5G01510 ... Ftri8G18535
Brassicaceae	Arabidopsis thaliana	3	AT2G34000.1, AT2G42350.1, AT2G42360.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10017175m.g.v1.0, Thhalv10017362m.g.v1.0 ... Thhalv10017923m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g16350.v2.2, Sp4g24510.v2.2, Sp4g24520.v2.2
Brassicaceae	Brassica nigra	8	BniB01g003500.2N, BniB01g003510.2N, BniB01g010190.2N ... BniB06g001440.2N, BniB06g001450.2N, BniB06g001460.2N, BniB06g023280.2N, BniB06g023290.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq02G2777, Ceq02G2778, Ceq02G2780, Ceq02G2783, Ceq02G2784
Casuarinaceae	Casuarina glauca	6	Cgl02G1376, Cgl02G2890, Cgl02G2891, Cgl02G2892, Cgl02G2896 ... Cgl02G2897
Cymodoceaceae	Cymodocea nodosa	8	gene.Cymno01g11490, gene.Cymno01g12550, gene.Cymno06g02780 ... gene.Cymno07g04720, gene.Cymno07g04730, gene.Cymno09g00680, gene.Cymno09g00690, gene.Cymno09g00700
Hydrocharitaceae	Thalassia testudinum	8	gene.Thate02g33690, gene.Thate02g33700, gene.Thate03g24650 ... gene.Thate03g24660, gene.Thate03g24670, gene.Thate07g15560, gene.Thate07g15570, gene.Thate07g15640
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4757
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.1739, evm.TU.LG07.1291
Plantaginaceae	Plantago ovata	4	Pov_00004060, Pov_00004608, Pov_00039587, Pov_00039593
Plumbaginaceae	Limonium bicolor	1	Lb2G10534
Poaceae	Echinochloa crus-galli	38	AH02.212, AH05.1087, AH05.3351, AH06.1886, AH06.1893 ... AH06.1895, AH06.1899, AH06.1900, AH06.1902, AH06.1904, AH07.1031, AH07.1032, BH05.1134, BH05.3355, BH06.1727, BH06.1736, BH06.1737, BH06.1738, BH06.1740, BH06.1743, BH06.1744, BH06.1746, BH06.1750, BH07.1153, BH07.1154, CH02.271, CH02.273, CH05.1283, CH05.3473, CH05.689, CH06.1927, CH06.1935, CH06.1936, CH06.1937, CH06.1941, CH06.1943, CH07.929, CH07.930
Poaceae	Eleusine coracana subsp. coracana	34	gene-QOZ80_1AG0002110, gene-QOZ80_1BG0050560 ... gene-QOZ80_1BG0050570, gene-QOZ80_1BG0050650, gene-QOZ80_2AG0107860, gene-QOZ80_2BG0161490, gene-QOZ80_2BG0161500, gene-QOZ80_4BG0355090, gene-QOZ80_5AG0388980, gene-QOZ80_5AG0388990, gene-QOZ80_5BG0449280, gene-QOZ80_6AG0541910, gene-QOZ80_6AG0541920, gene-QOZ80_6AG0542010, gene-QOZ80_6AG0542030, gene-QOZ80_6AG0542040, gene-QOZ80_6AG0542050, gene-QOZ80_6AG0542060, gene-QOZ80_6AG0542070, gene-QOZ80_6AG0542080, gene-QOZ80_6AG0542090, gene-QOZ80_6BG0495100, gene-QOZ80_6BG0495110, gene-QOZ80_6BG0495220, gene-QOZ80_6BG0495230, gene-QOZ80_6BG0495240, gene-QOZ80_6BG0495250, gene-QOZ80_6BG0495260, gene-QOZ80_6BG0495270, gene-QOZ80_6BG0495280, gene-QOZ80_6BG0495300, gene-QOZ80_6BG0495310, gene-QOZ80_6BG0495320, gene-QOZ80_6BG0495330
Poaceae	Hordeum vulgare	10	HORVU.MOREX.r3.1HG0025730.1.CDS1 ... HORVU.MOREX.r3.2HG0122160.1.CDS1, HORVU.MOREX.r3.3HG0245620.1.CDS1, HORVU.MOREX.r3.7HG0709310.1.CDS1, HORVU.MOREX.r3.7HG0709500.1.CDS1, HORVU.MOREX.r3.7HG0709570.1.CDS1, HORVU.MOREX.r3.7HG0709590.1.CDS1, HORVU.MOREX.r3.7HG0709620.1.CDS1, HORVU.MOREX.r3.7HG0709630.1.CDS1, HORVU.MOREX.r3.7HG0709650.1.CDS1
Poaceae	Lolium multiflorum	33	gene-QYE76_006600, gene-QYE76_010592, gene-QYE76_017653 ... gene-QYE76_017654, gene-QYE76_018457, gene-QYE76_018458, gene-QYE76_022059, gene-QYE76_022295, gene-QYE76_027166, gene-QYE76_034053, gene-QYE76_034054, gene-QYE76_034055, gene-QYE76_034056, gene-QYE76_034066, gene-QYE76_034072, gene-QYE76_034073, gene-QYE76_034075, gene-QYE76_034079, gene-QYE76_034080, gene-QYE76_034083, gene-QYE76_034086, gene-QYE76_034087, gene-QYE76_034088, gene-QYE76_034097, gene-QYE76_034098, gene-QYE76_051199, gene-QYE76_051200, gene-QYE76_051203, gene-QYE76_051208, gene-QYE76_051271, gene-QYE76_051283, gene-QYE76_051284, gene-QYE76_051288
Poaceae	Oryza coarctata	10	Oco03G006800, Oco09G005220, Oco10G005110, Oco11G010430 ... Oco12G010480, Oco12G010520, Oco12G010530, Oco12G010540, Oco23G005870, Oco24G005300
Poaceae	Oryza sativa	21	LOC_Os01g11460.1, LOC_Os01g11500.1, LOC_Os02g15100.1 ... LOC_Os02g15110.1, LOC_Os04g39830.1, LOC_Os05g07140.1, LOC_Os05g15170.1, LOC_Os06g34430.1, LOC_Os06g34530.1, LOC_Os06g34560.1, LOC_Os06g34610.1, LOC_Os06g34620.1, LOC_Os06g34640.1, LOC_Os06g34650.1, LOC_Os06g34860.1, LOC_Os06g34870.1, LOC_Os06g34880.1, LOC_Os07g34180.1, LOC_Os12g01750.1, LOC_Os12g24490.1, LOC_Os12g24530.1
Poaceae	Paspalum vaginatum	15	gene-BS78_03G020000, gene-BS78_04G104600, gene-BS78_K198900 ... gene-BS78_04G104700, gene-BS78_09G063800, gene-BS78_10G154900, gene-BS78_10G155700, gene-BS78_10G155800, gene-BS78_10G155900, gene-BS78_10G156000, gene-BS78_10G156100, gene-BS78_10G156200, gene-BS78_10G156300, gene-BS78_10G156400, gene-BS78_K290900
Poaceae	Puccinellia tenuiflora	14	Pt_Chr0205002, Pt_Chr0205106, Pt_Chr0400145, Pt_Chr0400146 ... Pt_Chr0400147, Pt_Chr0400149, Pt_Chr0400150, Pt_Chr0400152, Pt_Chr0400163, Pt_Chr0400164, Pt_Chr0400166, Pt_Chr0400170, Pt_Chr0400178, Pt_Chr0501432
Poaceae	Sporobolus alterniflorus	24	Chr02G028200, Chr02G028450, Chr02G028460, Chr02G028490 ... Chr02G028500, Chr02G028510, Chr05G005910, Chr05G005920, Chr05G006140, Chr05G006190, Chr05G006200, Chr0G013680, Chr0G033240, Chr10G015760, Chr10G015770, Chr10G015780, Chr10G015790, Chr10G015800, Chr11G006550, Chr11G006560, Chr11G006570, Chr11G006600, Chr12G024840, Chr22G012150
Poaceae	Thinopyrum elongatum	13	Tel1E01G193800, Tel2E01G310200, Tel3E01G248000 ... Tel3E01G248500, Tel7E01G050100, Tel7E01G570600, Tel7E01G570700, Tel7E01G571500, Tel7E01G571600, Tel7E01G571700, Tel7E01G571900, Tel7E01G572600, Tel7E01G573200
Poaceae	Triticum dicoccoides	20	gene_TRIDC1AG014710, gene_TRIDC1BG018830 ... gene_TRIDC3AG018420, gene_TRIDC3BG023580, gene_TRIDC4AG068970, gene_TRIDC7AG002130, gene_TRIDC7AG048390, gene_TRIDC7AG048440, gene_TRIDC7AG048490, gene_TRIDC7AG048500, gene_TRIDC7AG048540, gene_TRIDC7AG048550, gene_TRIDC7BG032500, gene_TRIDC7BG032510, gene_TRIDC7BG032520, gene_TRIDC7BG032570, gene_TRIDC7BG038840, gene_TRIDC7BG038900, gene_TRIDC7BG038910, gene_TRIDC7BG038930
Poaceae	Triticum aestivum	42	TraesCS1B02G128900.1.cds1, TraesCS1D02G112400.1.cds1 ... TraesCS2A02G156600.1.cds1, TraesCS2B02G182100.1.cds1, TraesCS2D02G162400.1.cds1, TraesCS3A02G131500.1.cds1, TraesCS3A02G139700.1.cds1, TraesCS3B02G164800.1.cds1, TraesCS3B02G165100.1.cds1, TraesCS3D02G147400.1.cds1, TraesCS3D02G147500.1.cds1, TraesCS3D02G147800.1.cds1, TraesCS7A02G023300.1.cds1, TraesCS7A02G346400.1.cds1, TraesCS7A02G346500.1.cds1, TraesCS7A02G346700.1.cds1, TraesCS7A02G346800.1.cds1, TraesCS7A02G346900.1.cds1, TraesCS7A02G347000.1.cds1, TraesCS7A02G347100.1.cds1, TraesCS7A02G347200.1.cds1, TraesCS7A02G347900.1.cds1, TraesCS7A02G348000.1.cds1, TraesCS7A02G458100.1, TraesCS7B02G235300.1.cds1, TraesCS7B02G236000.1.cds1, TraesCS7B02G236100.1, TraesCS7B02G236200.1.cds1, TraesCS7B02G236600.1.cds1, TraesCS7B02G236700.1.cds1, TraesCS7D02G020500.1.cds1, TraesCS7D02G021000.1.cds1, TraesCS7D02G141500.1.cds1, TraesCS7D02G331000.1.cds1, TraesCS7D02G331100.1.cds1, TraesCS7D02G331800.1.cds1, TraesCS7D02G331900.1.cds1, TraesCS7D02G332000.1.cds1, TraesCS7D02G332200.1.cds1, TraesCS7D02G332500.1.cds1, TraesCS7D02G332600.1.cds1, TraesCS7D02G332700.1.cds1
Poaceae	Zea mays	12	Zm00001eb120060_P001, Zm00001eb204430_P001 ... Zm00001eb238400_P001, Zm00001eb238420_P001, Zm00001eb277850_P001, Zm00001eb282260_P001, Zm00001eb347550_P001, Zm00001eb383470_P001, Zm00001eb383520_P001, Zm00001eb383530_P001, Zm00001eb383550_P001, Zm00001eb383560_P001
Poaceae	Zoysia japonica	16	nbis-gene-10266, nbis-gene-10267, nbis-gene-10268 ... nbis-gene-10269, nbis-gene-10296, nbis-gene-17879, nbis-gene-19342, nbis-gene-23498, nbis-gene-24352, nbis-gene-24354, nbis-gene-34199, nbis-gene-50242, nbis-gene-50889, nbis-gene-50890, nbis-gene-57668, nbis-gene-57897
Poaceae	Zoysia macrostachya	17	Zma_g12521, Zma_g12522, Zma_g15400, Zma_g18858, Zma_g27916 ... Zma_g30650, Zma_g30651, Zma_g30668, Zma_g30669, Zma_g30670, Zma_g31788, Zma_g32891, Zma_g32892, Zma_g32893, Zma_g32894, Zma_g9570, Zma_g9571
Portulacaceae	Portulaca oleracea	2	evm.TU.LG18.698, evm.TU.LG26.330
Posidoniaceae	Posidonia oceanica	7	gene.Posoc01g19180, gene.Posoc03g23350, gene.Posoc03g23380 ... gene.Posoc08g05460, gene.Posoc08g14470, gene.Posoc08g14480, gene.Posoc08g14500
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_10_RagTag.551, evm.TU.Scaffold_13_RagTag.330 ... evm.TU.Scaffold_4_RagTag.1719, evm.TU.Scaffold_5_RagTag.1297, evm.TU.Scaffold_9_RagTag.1193
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-11782, nbisL1-mrna-12965, nbisL1-mrna-20988 ... nbisL1-mrna-25775, nbisL1-mrna-26016, nbisL1-mrna-27489, nbisL1-mrna-4422
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-12800, nbisL1-mrna-16241, nbisL1-mrna-3090 ... nbisL1-mrna-7659, nbisL1-mrna-8324, nbisL1-mrna-8645, nbisL1-mrna-9893
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-11155, nbisL1-mrna-16173, nbisL1-mrna-16945 ... nbisL1-mrna-18689, nbisL1-mrna-21010, nbisL1-mrna-4525
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000003l.275, add.evm.TU.utg000006l.298 ... add.evm.TU.utg000008l.384, add.evm.TU.utg000009l.427, add.evm.TU.utg000033l.124
Rhizophoraceae	Kandelia obovata	2	Maker00000111, Maker00014916
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-17245, nbisL1-mrna-18327, nbisL1-mrna-19098 ... nbisL1-mrna-19099, nbisL1-mrna-20653, nbisL1-mrna-22735
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-1101, nbisL1-mrna-16806, nbisL1-mrna-16807 ... nbisL1-mrna-19994, nbisL1-mrna-8150
Salicaceae	Populus euphratica	5	populus_peu06417, populus_peu11864, populus_peu18092 ... populus_peu18807, populus_peu20256
Solanaceae	Lycium barbarum	5	gene-LOC132617535, gene-LOC132617858, gene-LOC132630100 ... gene-LOC132633728, gene-LOC132638001
Solanaceae	Solanum chilense	2	SOLCI004286500, SOLCI005069000
Solanaceae	Solanum pennellii	2	gene-LOC107005920, gene-LOC107025462
Tamaricaceae	Reaumuria soongarica	1	STRG.17706_chr09_+
Tamaricaceae	Tamarix chinensis	1	TC01G2665
Zosteraceae	Zostera marina	3	Zosma01g27630.v3.1, Zosma04g06880.v3.1, Zosma06g26170.v3.1