Basic Information
Locus ID:
Pt_Chr0307515
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Utp13 specific WD40 associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 230008547 | 230015040 | - | Pt_Chr0307515 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 91,803.58 Da | 40.35 | 86.75 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 64 | 481 | 7.68131E-52 | - |
| CDD | cd00200 | WD40 | 357 | 633 | 1.58065E-58 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 101 | 138 | 3.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 144 | 189 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 69 | 96 | 0.0095 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 399 | 439 | 1.7E-6 | IPR001680 |
| Pfam | PF08625 | Utp13 specific WD40 associated domain | 642 | 775 | 1.2E-44 | IPR013934 |
| Pfam | PF00400 | WD domain, G-beta repeat | 504 | 534 | 8.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 194 | 231 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 444 | 481 | 7.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 580 | 617 | 6.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 543 | 575 | 5.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 66 | 303 | 4.53E-50 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 353 | 633 | 9.16E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 495 | 671 | 2.1E-40 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 33 | 172 | 1.0E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 349 | 488 | 1.5E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 173 | 348 | 4.1E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 579 | 618 | 1.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 231 | 9.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 141 | 189 | 0.41 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 482 | 8.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 439 | 5.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 354 | 394 | 7.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 99 | 138 | 1.7E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 57 | 96 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 537 | 576 | 1.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 534 | 2.7E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 449 | 481 | 9.731054 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 544 | 577 | 11.286501 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 199 | 233 | 14.485216 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 544 | 585 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 64 | 99 | 10.416506 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 106 | 140 | 9.731054 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 106 | 140 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 586 | 623 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 404 | 448 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 404 | 441 | 9.388329 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 148 | 198 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 64 | 105 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 502 | 535 | 10.07378 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 199 | 233 | 11.971952 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 502 | 535 | 12.079106 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 481 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 586 | 627 | 13.582925 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 426 | 440 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 218 | 232 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 125 | 139 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 469 | 483 | 3.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 218 | 232 | 3.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 426 | 440 | 3.0E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 787 | 839 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development. | 0 |
| RefSeq | XP_037465604.1 | transducin beta-like protein 3 [Triticum dicoccoides] | 0 |
| Q9LFE2 | Protein TORMOZ EMBRYO DEFECTIVE OS=Arabidopsis thaliana OX=3702 GN=TOZ PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6SK68 | Utp13 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2053 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15511 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024730 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39300, Sbi_jg54626 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11150 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020542 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl15114, Sgl20242, Sgl20255 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015509, gene:ENSEOMG00000032914 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1AG0015600, CQ.Regalona.r1.1BG0010080 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30217010 |
| Apiaceae | Apium graveolens | 1 | Ag3G02356 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G012200, COCNU_07G003690 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701598 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3487.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G24593 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G16750.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012644m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g27370.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g046000.2N, BniB05g022400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1761 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1937 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g08420 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0002s00015.v1.0, Dusal.0002s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g18680 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2404 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011279 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03207, Lb1G03224 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2142, BH09.2305, CH09.2445 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0305630, gene-QOZ80_4BG0336600 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0197290.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_045955, gene-QYE76_046012 |
| Poaceae | Oryza coarctata | 2 | Oco07G014590, Oco08G014050 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g50660.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G210800 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0206006, Pt_Chr0301539, Pt_Chr0301550, Pt_Chr0305598 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G003250, Chr25G004250, Chr26G014440, Chr30G004100 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G758800, Tel7E01G881400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG063940, gene_TRIDC2BG068140 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G447700.1, TraesCS2B02G468100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb072270_P001, Zm00001eb153310_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-22717 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20346 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2511, evm.TU.LG23.732 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g20630 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.575 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7607 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15718 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5596 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.351 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011434 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8466 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-680 |
| Salicaceae | Populus euphratica | 2 | populus_peu16232, populus_peu31249 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132630652, gene-LOC132632257 |
| Solanaceae | Solanum chilense | 1 | SOLCI002068200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012090 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8601_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2432 |
| Zosteraceae | Zostera marina | 1 | Zosma04g02310.v3.1 |