Basic Information
Locus ID:
Pt_Chr0307447
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 228340665 | 228342693 | + | Pt_Chr0307447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 52,371.23 Da | 39.91 | 88.88 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 107 | 235 | 1.49839E-24 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 260 | 376 | 1.3E-21 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 251 | 376 | 2.04E-27 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 105 | 244 | 1.64E-30 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 377 | 454 | 1.3E-11 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 246 | 373 | 2.5E-31 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 107 | 239 | 8.7E-25 | IPR008974 |
| SMART | SM00225 | BTB_4 | 270 | 378 | 1.7E-18 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 270 | 332 | 16.734783 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 106 | 235 | 18.140827 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 71 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_047063660.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium rigidum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5ZPM5 | BTB domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046262 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0301109, Pt_Chr0301111, Pt_Chr0307445, Pt_Chr0307447 |