Basic Information
Locus ID:
Pt_Chr0307445
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
protein modification by small protein conjugation or removal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 228308636 | 228310942 | + | Pt_Chr0307445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 58,416.69 Da | 42.75 | 80.00 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 152 | 281 | 2.77036E-23 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 306 | 422 | 1.1E-22 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 297 | 422 | 5.89E-29 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 150 | 290 | 1.6E-29 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 423 | 500 | 2.5E-11 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 152 | 286 | 3.6E-23 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 292 | 419 | 1.7E-32 | IPR011333 |
| SMART | SM00225 | BTB_4 | 316 | 424 | 5.0E-21 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 316 | 384 | 17.169106 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 151 | 281 | 15.788432 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 100 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_047063660.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium rigidum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5ZPM5 | BTB domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046262 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0301109, Pt_Chr0301111, Pt_Chr0307445, Pt_Chr0307447 |