halophFGD

Basic Information

Locus ID: Pt_Chr0307444

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: Belongs to the ATG8 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr03	228288989	228291763	+	Pt_Chr0307444

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.07	13,629.61 Da	30.56	89.33	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16128	Ubl_ATG8	12	114	1.01403E-70	-
Pfam	PF02991	Autophagy protein Atg8 ubiquitin like	14	117	3.9E-51	IPR004241
SUPERFAMILY	SSF54236	Ubiquitin-like	3	117	2.84E-43	IPR029071
Gene3D	G3DSA:3.10.20.90	-	1	118	9.1E-60	-

KEGG Pathway

KO Term:

K08341 (GABA(A) receptor-associated protein)

Pathway:

ko04068 (FoxO signaling pathway) map04068 (FoxO signaling pathway) ko04136 (Autophagy - other) map04136 (Autophagy - other) ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal) ko04138 (Autophagy - yeast) map04138 (Autophagy - yeast) ko04139 (Mitophagy - yeast) map04139 (Mitophagy - yeast) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) ko04212 (Longevity regulating pathway - worm) map04212 (Longevity regulating pathway - worm) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway) map04621 (NOD-like receptor signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G62040.1	Ubiquitin-like superfamily protein.
RefSeq	XP_037487263.1	autophagy-related protein 8C [Triticum dicoccoides]
Swiss-Prot	A2YS06	Autophagy-related protein 8C OS=Oryza sativa subsp. indica OX=39946 GN=ATG8C PE=3 SV=2
TrEMBL	U3PVX7	Autophagy-related protein OS=Triticum aestivum OX=4565 GN=ATG8e PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg20428, jg21521, jg24548, jg38386, jg4903
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1954, gene_7272
Amaranthaceae	Atriplex hortensis	2	Ah004802, Ah017517
Amaranthaceae	Beta vulgaris	1	BVRB_8g186120
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg18185, Sbi_jg24379, Sbi_jg36529, Sbi_jg40157 ... Sbi_jg50100
Amaranthaceae	Salicornia europaea	3	Seu_jg11805, Seu_jg1734, Seu_jg4532
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00001556, GOSA_00006679, GOSA_00011330
Amaranthaceae	Suaeda glauca	6	Sgl23371, Sgl28486, Sgl46324, Sgl51038, Sgl51548, Sgl56832
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000004967, gene:ENSEOMG00000009623 ... gene:ENSEOMG00000011899, gene:ENSEOMG00000021276, gene:ENSEOMG00000024792, gene:ENSEOMG00000028186, gene:ENSEOMG00000033809, gene:ENSEOMG00000043967, gene:ENSEOMG00000047854
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.4AG0022700, CQ.Regalona.r1.4BG0023920 ... CQ.Regalona.r1.5AG0000210, CQ.Regalona.r1.5BG0000240, CQ.Regalona.r1.8BG0001590
Anacardiaceae	Pistacia vera	6	pistato.v30002560, pistato.v30018420, pistato.v30069320 ... pistato.v30142710, pistato.v30156530, pistato.v30158410
Apiaceae	Apium graveolens	4	Ag4G02386, Ag6G00614, Ag8G01081, AgUnG01336
Arecaceae	Cocos nucifera	4	COCNU_06G012210, COCNU_09G003200, COCNU_14G008040 ... scaffold001580G000020
Arecaceae	Phoenix dactylifera	4	gene-LOC103705136, gene-LOC103717620, gene-LOC103720494 ... gene-LOC103720683
Asparagaceae	Asparagus officinalis	7	AsparagusV1_03.1193.V1.1, AsparagusV1_04.3529.V1.1 ... AsparagusV1_06.169.V1.1, AsparagusV1_07.3789.V1.1, AsparagusV1_08.213.V1.1, AsparagusV1_08.2484.V1.1, AsparagusV1_10.18.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G20793, Ftri16G15905, Ftri16G24720, Ftri2G17114 ... Ftri5G07793
Brassicaceae	Arabidopsis thaliana	7	AT1G62040.2, AT2G05630.2, AT2G45170.1, AT3G60640.1 ... AT4G04620.1, AT4G16520.1, AT4G21980.2
Brassicaceae	Eutrema salsugineum	6	Thhalv10006314m.g.v1.0, Thhalv10009130m.g.v1.0 ... Thhalv10023763m.g.v1.0, Thhalv10026531m.g.v1.0, Thhalv10026582m.g.v1.0, Thhalv10029077m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp2g02520.v2.2, Sp3g24090.v2.2, Sp4g27220.v2.2 ... Sp5g02600.v2.2, Sp6g04260.v2.2, Sp7g15090.v2.2, Sp7g20170.v2.2, SpUn0031_0100.v2.2
Brassicaceae	Brassica nigra	10	BniB02g010840.2N, BniB02g059100.2N, BniB02g073200.2N ... BniB05g015080.2N, BniB05g019790.2N, BniB05g056100.2N, BniB06g055310.2N, BniB07g022230.2N, BniB08g029440.2N, BniB08g047680.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1342, Ceq02G2428, Ceq03G0129, Ceq04G1611, Ceq05G1145
Casuarinaceae	Casuarina glauca	6	Cgl01G1504, Cgl02G2496, Cgl02G2510, Cgl03G0141, Cgl04G1790 ... Cgl05G1156
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno03g07670, gene.Cymno13g01380, gene.Cymno17g05370 ... gene.Cymno18g04160
Dunaliellaceae	Dunaliella salina	1	Dusal.0066s00009.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g19110, gene.Thate04g16640, gene.Thate08g06660
Malvaceae	Hibiscus hamabo Siebold & Zucc.	6	nbisL1-mrna-1016, nbisL1-mrna-11142, nbisL1-mrna-2541 ... nbisL1-mrna-2772, nbisL1-mrna-2781, nbisL1-mrna-4834
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG04.147, evm.TU.LG04.2069, evm.TU.LG05.1886 ... evm.TU.LG10.1215, evm.TU.LG12.1134
Plantaginaceae	Plantago ovata	3	Pov_00005930, Pov_00008820, Pov_00039041
Plumbaginaceae	Limonium bicolor	6	Lb0G37232, Lb2G10002, Lb2G10034, Lb2G11251, Lb4G22083 ... Lb5G28293
Poaceae	Echinochloa crus-galli	6	AH03.3146, AH09.2345, BH03.3332, BH08.579, BH09.2542 ... CH09.2777
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_4AG0303440, gene-QOZ80_4BG0334350 ... gene-QOZ80_7BG0600590, gene-QOZ80_8AG0619930, gene-QOZ80_8BG0647810
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0141620.1, HORVU.MOREX.r3.2HG0194650.1
Poaceae	Lolium multiflorum	3	gene-QYE76_041023, gene-QYE76_041037, gene-QYE76_046407
Poaceae	Oryza coarctata	7	Oco07G016340, Oco08G015790, Oco13G008450, Oco14G008910 ... Oco15G003690, Oco16G003610, Oco23G003440
Poaceae	Oryza sativa	3	LOC_Os04g53240.4, LOC_Os07g32800.2, LOC_Os08g09240.1
Poaceae	Paspalum vaginatum	2	gene-BS78_06G234600, gene-BS78_07G073900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0301108, Pt_Chr0307444
Poaceae	Sporobolus alterniflorus	11	Chr16G002470, Chr17G002180, Chr19G005720, Chr20G012470 ... Chr23G004730, Chr25G002780, Chr26G015950, Chr27G011580, Chr28G007750, Chr29G010200, Chr30G002780
Poaceae	Thinopyrum elongatum	2	Tel2E01G416900, Tel2E01G790200
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG066400, gene_TRIDC2BG071430
Poaceae	Triticum aestivum	5	TraesCS2A02G224000.1, TraesCS2A02G468300.1 ... TraesCS2B02G274200.1, TraesCS2B02G491200.1, TraesCS2D02G229900.1
Poaceae	Zea mays	5	Zm00001eb070240_P001, Zm00001eb105850_P001 ... Zm00001eb171400_P001, Zm00001eb413320_P001, Zm00001eb431210_P001
Poaceae	Zoysia japonica	3	nbis-gene-38905, nbis-gene-48540, nbis-gene-5882
Poaceae	Zoysia macrostachya	4	Zma_g21988, Zma_g22601, Zma_g23730, Zma_g5221
Portulacaceae	Portulaca oleracea	8	evm.TU.LG02.1587, evm.TU.LG04.3548, evm.TU.LG09.387 ... evm.TU.LG10.154, evm.TU.LG16.31, evm.TU.LG17.150, evm.TU.LG18.878, evm.TU.LG20.991
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g19320, gene.Posoc07g03920, gene.Posoc10g03230
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.1002, evm.TU.Scaffold_13_RagTag.55 ... evm.TU.Scaffold_14_RagTag.345, evm.TU.Scaffold_16_RagTag.326, evm.TU.Scaffold_5_RagTag.1517
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-12004, nbisL1-mrna-18023, nbisL1-mrna-20416 ... nbisL1-mrna-20483, nbisL1-mrna-23953, nbisL1-mrna-29764, nbisL1-mrna-8318, nbisL1-mrna-8395, nbisL1-mrna-8672
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-1187, nbisL1-mrna-12279, nbisL1-mrna-14869 ... nbisL1-mrna-19041, nbisL1-mrna-5433, nbisL1-mrna-8817
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-10979, nbisL1-mrna-20209, nbisL1-mrna-20782 ... nbisL1-mrna-21347, nbisL1-mrna-21705
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000003l.841, evm.TU.utg000006l.872 ... evm.TU.utg000007l.165, evm.TU.utg000015l.38, evm.TU.utg000022l.300, evm.TU.utg000027l.33
Rhizophoraceae	Kandelia obovata	5	Maker00009248, Maker00013854, Maker00014190, Maker00015958 ... Maker00017401
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-10400, nbisL1-mrna-1216, nbisL1-mrna-16140 ... nbisL1-mrna-3439, nbisL1-mrna-6054, nbisL1-mrna-9450
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-15464, nbisL1-mrna-22750, nbisL1-mrna-23435 ... nbisL1-mrna-4718, nbisL1-mrna-6556
Salicaceae	Populus euphratica	8	populus_peu03379, populus_peu10340, populus_peu16400 ... populus_peu16412, populus_peu18491, populus_peu27021, populus_peu31812, populus_peu34231
Solanaceae	Lycium barbarum	6	gene-LOC132609823, gene-LOC132616552, gene-LOC132616774 ... gene-LOC132621576, gene-LOC132628164, gene-LOC132635085
Solanaceae	Solanum chilense	6	SOLCI000918800, SOLCI002510700, SOLCI003123000 ... SOLCI004698400, SOLCI005205100, SOLCI006737200
Solanaceae	Solanum pennellii	6	gene-LOC107011693, gene-LOC107012830, gene-LOC107024185 ... gene-LOC107026670, gene-LOC107028794, gene-LOC107032079
Tamaricaceae	Reaumuria soongarica	5	STRG.23131_chr05_-, STRG.30346_chr10_+, gene_13136 ... gene_1518, gene_17840
Tamaricaceae	Tamarix chinensis	4	TC01G2322, TC03G2630, TC05G2970, TC08G0087
Zosteraceae	Zostera marina	4	Zosma02g05600.v3.1, Zosma04g22010.v3.1, Zosma04g26530.v3.1 ... Zosma06g03630.v3.1