Basic Information
Locus ID:
Pt_Chr0307435
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 228097536 | 228144224 | - | Pt_Chr0307435 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 185,044.20 Da | 33.47 | 82.46 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 29 | 150 | 6.31868E-14 | IPR002083 |
| CDD | cd00121 | MATH | 908 | 1032 | 5.00703E-14 | IPR002083 |
| CDD | cd00121 | MATH | 1363 | 1487 | 5.15227E-16 | IPR002083 |
| CDD | cd00121 | MATH | 1058 | 1182 | 2.08313E-10 | IPR002083 |
| CDD | cd00121 | MATH | 1493 | 1617 | 1.60915E-16 | IPR002083 |
| CDD | cd18280 | BTB_POZ_BPM_plant | 174 | 289 | 2.02472E-42 | - |
| CDD | cd00121 | MATH | 599 | 727 | 1.03422E-11 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 449 | 567 | 5.7E-14 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 746 | 810 | 4.6E-11 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 1212 | 1286 | 2.6E-18 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 179 | 290 | 3.1E-24 | IPR000210 |
| Pfam | PF00917 | MATH domain | 915 | 1030 | 0.0036 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 603 | 727 | 4.25E-15 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 737 | 831 | 5.1E-20 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 26 | 160 | 2.78E-20 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 1360 | 1487 | 2.45E-20 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 1204 | 1309 | 6.08E-24 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 907 | 1029 | 5.4E-20 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 172 | 290 | 2.75E-29 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 1491 | 1619 | 3.27E-21 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 439 | 538 | 6.87E-24 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 1054 | 1192 | 4.41E-20 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 1293 | 1346 | 8.6E-10 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1205 | 1292 | 6.5E-26 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 432 | 536 | 1.0E-22 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 293 | 365 | 9.5E-20 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 731 | 827 | 4.7E-19 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 840 | 886 | 2.2E-7 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 26 | 157 | 2.5E-16 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 907 | 1036 | 2.3E-19 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 1054 | 1189 | 1.4E-17 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 168 | 292 | 3.9E-33 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 1362 | 1491 | 3.4E-18 | IPR008974 |
| Gene3D | G3DSA:6.10.250.3030 | - | 537 | 582 | 9.2E-17 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 600 | 730 | 4.6E-14 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 1492 | 1621 | 2.9E-15 | IPR008974 |
| SMART | SM00061 | math_3 | 578 | 714 | 0.26 | IPR002083 |
| SMART | SM00061 | math_3 | 1494 | 1605 | 0.079 | IPR002083 |
| SMART | SM00061 | math_3 | 34 | 135 | 0.1 | IPR002083 |
| SMART | SM00061 | math_3 | 1367 | 1478 | 8.4E-6 | IPR002083 |
| SMART | SM00225 | BTB_4 | 755 | 833 | 3.5E-6 | IPR000210 |
| SMART | SM00061 | math_3 | 909 | 1026 | 0.012 | IPR002083 |
| SMART | SM00061 | math_3 | 1060 | 1167 | 0.89 | IPR002083 |
| SMART | SM00225 | BTB_4 | 1220 | 1312 | 2.1E-12 | IPR000210 |
| SMART | SM00225 | BTB_4 | 188 | 292 | 5.2E-21 | IPR000210 |
| SMART | SM00225 | BTB_4 | 457 | 540 | 1.4E-11 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 27 | 152 | 13.691732 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 755 | 810 | 12.701794 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 1492 | 1624 | 10.77681 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 1220 | 1287 | 16.817513 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 188 | 255 | 17.21047 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 457 | 514 | 13.818622 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 907 | 1047 | 16.734505 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 601 | 731 | 11.364908 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 1055 | 1190 | 12.33655 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 1362 | 1490 | 14.944638 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_044328862.1 | BTB/POZ and MATH domain-containing protein 2-like [Triticum aestivum] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0PEC1 | BTB domain-containing protein OS=Oryza rufipogon OX=4529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology