Basic Information
Locus ID:
Pt_Chr0307262
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 222807958 | 222812108 | - | Pt_Chr0307262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.60 | 35,494.83 Da | 50.05 | 63.66 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 1.5E-78 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 2.6E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 7 | 107 | 3.6E-42 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 224 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_020170721.1 | ubiquitin fusion degradation protein 1 homolog [Aegilops tauschii subsp. strangulata] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A453CL12 | Ubiquitin fusion degradation protein 1-like protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology