Basic Information
Locus ID:
Pt_Chr0307229
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 221818296 | 221820162 | - | Pt_Chr0307229 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 54,543.10 Da | 47.67 | 94.35 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 54 | 9.97E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 164 | 437 | 6.8E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 134 | 441 | 3.0E-8 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 55 | 1.1E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22610.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_002446938.1 | F-box/FBD/LRR-repeat protein At5g22660 [Sorghum bicolor] | 0 |
| Q9FNK0 | Putative F-box/FBD/LRR-repeat protein At5g22610 OS=Arabidopsis thaliana OX=3702 GN=At5g22610 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0A9BXV8 | F-box domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH09.1354 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G454500, gene-BS78_06G136700, gene-BS78_K067800 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307229 |