Basic Information
Locus ID:
Pt_Chr0307219
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 221686118 | 221688950 | + | Pt_Chr0307219 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 49,328.79 Da | 49.09 | 82.91 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 233 | 370 | 1.1E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 184 | 227 | 3.14E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 182 | 221 | 4.8E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 222 | 373 | 1.5E-9 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 177 | 224 | 9.02057 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26000.1 | Ribonuclease inhibitor. | 0 |
| RefSeq | XP_037486068.1 | F-box protein SKIP14-like [Triticum dicoccoides] | 0 |
| Q9LU91 | F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6C8U6 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology