Basic Information
Locus ID:
Pt_Chr0307183
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 220840094 | 220853220 | - | Pt_Chr0307183 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 144,229.59 Da | 42.67 | 88.64 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 287 | 329 | 2.48927E-24 | - |
| Pfam | PF04564 | U-box domain | 284 | 353 | 3.4E-19 | IPR003613 |
| Pfam | PF01593 | Flavin containing amine oxidoreductase | 823 | 1301 | 4.2E-72 | IPR002937 |
| SUPERFAMILY | SSF57850 | RING/U-box | 275 | 358 | 5.71E-28 | - |
| SUPERFAMILY | SSF54373 | FAD-linked reductases, C-terminal domain | 1135 | 1246 | 7.06E-27 | - |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 819 | 1300 | 1.73E-39 | IPR036188 |
| SUPERFAMILY | SSF48371 | ARM repeat | 441 | 727 | 5.28E-24 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 282 | 356 | 2.5E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 444 | 806 | 1.4E-28 | IPR011989 |
| Gene3D | G3DSA:1.10.3110.10 | protoporphyrinogen ix oxidase, domain 3 | 908 | 1017 | 5.9E-138 | - |
| Gene3D | G3DSA:3.90.660.20 | Protoporphyrinogen oxidase, mitochondrial; domain 2 | 850 | 1248 | 5.9E-138 | - |
| Gene3D | G3DSA:3.50.50.60 | - | 819 | 1297 | 5.9E-138 | IPR036188 |
| SMART | SM00504 | Ubox_2 | 286 | 349 | 1.6E-31 | IPR003613 |
| SMART | SM00185 | arm_5 | 526 | 564 | 13.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 565 | 608 | 260.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 480 | 524 | 11.0 | IPR000225 |
| TIGRFAM | TIGR00562 | proto_IX_ox: protoporphyrinogen oxidase | 816 | 1305 | 1.1E-70 | IPR004572 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 282 | 356 | 39.524353 | IPR003613 |
| Coils | Coil | Coil | 720 | 740 | - | - |
| Coils | Coil | Coil | 748 | 776 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27910.1 | plant U-box 45. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. | 0 |
| RefSeq | XP_047068599.1 | U-box domain-containing protein 7-like [Lolium rigidum] | 0 |
| Q9C7G1 | U-box domain-containing protein 45 OS=Arabidopsis thaliana OX=3702 GN=PUB45 PE=1 SV=1 | 0 | |
| TrEMBL | M7Z8E1 | U-box domain-containing protein 7 OS=Triticum urartu OX=4572 GN=TRIUR3_28334 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40453 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17450 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19902, Sbi_jg44619 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17335 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl65810, Sgl65842, Sgl70152 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015801, gene:ENSEOMG00000022043 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0008220, CQ.Regalona.r1.2BG0009700 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30024350 |
| Apiaceae | Apium graveolens | 1 | Ag9G00410 |
| Arecaceae | Cocos nucifera | 1 | scaffold003417G000080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702932 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.847.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G09882 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G14220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013706m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g29810.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g048440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0187 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0128 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g02950 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g18390 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.168 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024256 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15062 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1388, BH09.1574, CH09.1692 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0312740, gene-QOZ80_4BG0343880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0177420.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044869 |
| Poaceae | Oryza coarctata | 2 | Oco07G009280, Oco08G009140 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g41260.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G142700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307183 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr23G010050, Chr25G009610, Chr26G009600, Chr26G009720 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G605000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG050290, gene_TRIDC2BG053550 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G347900.1, TraesCS2B02G366300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb078900_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36941 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19954 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1297, evm.TU.LG25.27 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.47 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14845 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17632 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-44 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.31 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007479 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11945 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17546 |
| Salicaceae | Populus euphratica | 1 | populus_peu01209 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616532 |
| Solanaceae | Solanum chilense | 1 | SOLCI004109600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015145 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_275 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1021 |
| Zosteraceae | Zostera marina | 1 | Zosma05g07110.v3.1 |