Basic Information
Locus ID:
Pt_Chr0307125
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 219006138 | 219011573 | - | Pt_Chr0307125 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 88,273.73 Da | 56.77 | 66.11 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 325 | 657 | 1.49124E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 360 | 1.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 485 | 522 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 444 | 480 | 6.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 619 | 656 | 0.034 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 322 | 662 | 1.6E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 285 | 379 | 6.0E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 429 | 695 | 1.1E-49 | IPR015943 |
| SMART | SM00320 | WD40_4 | 483 | 522 | 3.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 572 | 615 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 616 | 657 | 0.0064 | IPR001680 |
| SMART | SM00320 | WD40_4 | 524 | 563 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 322 | 361 | 2.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 480 | 1.5E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 449 | 483 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 329 | 370 | 14.451798 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 489 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 329 | 366 | 11.5765 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 489 | 524 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 489 | 524 | 10.469233 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 348 | 362 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 467 | 481 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 467 | 481 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 509 | 523 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 348 | 362 | 1.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 774 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 702 | 733 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_003579484.1 | WD repeat-containing protein 44 [Brachypodium distachyon] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | I1J3D8 | WD_REPEATS_REGION domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100841789 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology