Basic Information
Locus ID:
Pt_Chr0306855
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Cytosine-specific methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 212278110 | 212284178 | + | Pt_Chr0306855 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 37,115.47 Da | 34.01 | 83.12 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 3 | 281 | 4.3E-29 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 3 | 281 | 7.75E-55 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 105 | 247 | 8.4E-99 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 248 | 299 | 8.4E-99 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 2 | 104 | 1.1E-60 | - |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 1 | 288 | 37.375996 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 87 | 100 | 3.2E-5 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 41 | 55 | 3.2E-5 | IPR001525 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_010234610.1 | DNA (cytosine-5)-methyltransferase CMT3 [Brachypodium distachyon] | 0 |
| Q9ARI6 | DNA (cytosine-5)-methyltransferase 2 OS=Zea mays OX=4577 GN=ZMET5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453Q0N5 | Cytosine-specific methyltransferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology