Basic Information
Locus ID:
Pt_Chr0306853
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Cytosine-specific methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 212227788 | 212233886 | + | Pt_Chr0306853 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 102,520.64 Da | 43.18 | 75.16 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 428 | 482 | 1.65243E-27 | - |
| Pfam | PF01426 | BAH domain | 182 | 303 | 1.7E-12 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 491 | 874 | 2.7E-33 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 429 | 482 | 1.9E-12 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 410 | 491 | 4.03E-18 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 330 | 874 | 7.21E-77 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 330 | 892 | 2.6E-253 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 127 | 289 | 4.8E-51 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 645 | 840 | 2.6E-253 | - |
| SMART | SM00298 | chromo_7 | 428 | 485 | 1.5E-11 | IPR000953 |
| SMART | SM00439 | BAH_4 | 181 | 304 | 3.1E-18 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 429 | 483 | 14.548501 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 328 | 881 | 43.595341 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 181 | 304 | 19.492834 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 497 | 509 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 329 | 345 | 8.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 540 | 554 | 8.2E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 586 | 599 | 8.2E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_044404969.1 | DNA (cytosine-5)-methyltransferase 1-like isoform X1 [Triticum aestivum] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PRW6 | DNA (cytosine-5-)-methyltransferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology