Basic Information
Locus ID:
Pt_Chr0306736
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 209235014 | 209239730 | + | Pt_Chr0306736 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 54,600.82 Da | 56.98 | 71.11 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 370 | 401 | 0.031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 324 | 352 | 0.19 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 133 | 479 | 8.98E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 214 | 479 | 1.9E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 119 | 156 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 270 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 357 | 0.003 | IPR001680 |
| SMART | SM00320 | WD40_4 | 360 | 401 | 0.0088 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 481 | 120.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 90 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_047060126.1 | autophagy-related protein 18a-like [Lolium rigidum] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6WVY7 | WD_REPEATS_REGION domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology