Basic Information
Locus ID:
Pt_Chr0306673
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 206221235 | 206229580 | - | Pt_Chr0306673 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 117,661.21 Da | 61.49 | 81.96 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01399 | PCI domain | 375 | 509 | 1.5E-12 | IPR000717 |
| Gene3D | G3DSA:1.25.40.860 | - | 269 | 342 | 2.3E-21 | - |
| Gene3D | G3DSA:1.25.40.860 | - | 352 | 494 | 2.3E-28 | - |
| Gene3D | G3DSA:4.10.860.10 | UVR domain | 217 | 268 | 2.2E-24 | - |
| SMART | SM00753 | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 441 | 525 | 3.2E-4 | - |
| SMART | SM00088 | PINT_4 | 441 | 525 | 3.2E-4 | IPR000717 |
| ProSiteProfiles | PS50250 | PCI domain profile. | 316 | 513 | 16.060083 | IPR000717 |
| Hamap | MF_03000 | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 1 | 959 | 25.378336 | IPR027512 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 996 | 1016 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 605 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 848 | 872 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 848 | 1016 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 932 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 891 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 936 | 952 | - | - |
| Coils | Coil | Coil | 821 | 868 | - | - |
| Coils | Coil | Coil | 613 | 642 | - | - |
| Coils | Coil | Coil | 671 | 691 | - | - |
| Coils | Coil | Coil | 561 | 581 | - | - |
| Coils | Coil | Coil | 793 | 816 | - | - |
| Coils | Coil | Coil | 93 | 120 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11420.1 | eukaryotic translation initiation factor 3A. Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. | 0 |
| RefSeq | XP_047073320.1 | eukaryotic translation initiation factor 3 subunit A-like [Lolium rigidum] | 0 |
| Q9XHR2 | Eukaryotic translation initiation factor 3 subunit A OS=Zea mays OX=4577 GN=TIF3A1 PE=2 SV=1 | 0 | |
| TrEMBL | M8BQY8 | Eukaryotic translation initiation factor 3 subunit A OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16861, jg26542 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10384, gene_8377 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000755, Ah024601 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g076280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17204, Sbi_jg61808 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg463 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015389 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24426, Sgl29601 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000011829, gene:ENSEOMG00000013177 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0015440, CQ.Regalona.r1.1BG0010550 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30081840 |
| Apiaceae | Apium graveolens | 3 | Ag11G03600, Ag3G01383, Ag3G01961 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G002930, COCNU_12G003410 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703468, gene-LOC103720979 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1856.V1.1, AsparagusV1_04.908.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G28393 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G11420.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10026980m.g.v1.0, Thhalv10028395m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g080400.2N, BniB05g057140.2N, BniB08g036550.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1141, Ceq08G1192 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G1188, Cgl08G1225 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g00950 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0995s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g02580, gene.Thate02g02590, gene.Thate03g17660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8254, nbisL1-mrna-8255 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG03.2501, evm.TU.LG03.2502, evm.TU.LG07.452 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002164, Pov_00039735 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G07108, Lb6G31685, Lb7G33334, Lb7G33335, Lb7G33342 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1209, BH02.881, CH02.1009 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0007620, gene-QOZ80_1BG0056390 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0224450.1, HORVU.MOREX.r3.7HG0646350.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031437, gene-QYE76_049285 |
| Poaceae | Oryza coarctata | 2 | Oco01G000820, Oco02G000890 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G084000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203543, Pt_Chr0205441, Pt_Chr0306673 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G024690, Chr03G003230, Chr05G002540, Chr08G001790 |
| Poaceae | Thinopyrum elongatum | 5 | Tel3E01G045700, Tel5E01G100000, Tel7E01G151100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3AG000570, gene_TRIDC3BG003320 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS3A02G025500.1, TraesCS3B02G019500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb121480_P002, Zm00001eb337210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7106 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9868 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.835, evm.TU.LG08.836, evm.TU.LG22.1088 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g18080, gene.Posoc04g00260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.85 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8191 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5162 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5171 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.62 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011346 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7896 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-76 |
| Salicaceae | Populus euphratica | 3 | populus_peu13323, populus_peu15642, populus_peu15643 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607057, gene-LOC132630267 |
| Solanaceae | Solanum chilense | 2 | SOLCI003893900, SOLCI004221500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002579, gene-LOC107030958 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31399_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2478, TC09G1887 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01990.v3.1 |