Basic Information
Locus ID:
Pt_Chr0306668
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 206092728 | 206097328 | + | Pt_Chr0306668 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 66,294.55 Da | 38.47 | 96.38 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 83 | 139 | 2.6E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 76 | 1.3E-13 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 288 | 554 | 1.8E-41 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 265 | 555 | 3.5E-73 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 38 | 178 | 1.4E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 193 | 5.1E-46 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 362 | 574 | 1.8E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 254 | 361 | 7.3E-38 | - |
| SMART | SM00369 | LRR_typ_2 | 102 | 126 | 1.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 150 | 173 | 45.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 285 | 554 | 2.2E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 285 | 575 | 34.138569 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 104 | 126 | 7.280716 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 404 | 416 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 291 | 313 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 105 | 118 | 1.9E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 150 | 163 | 1.9E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16000.1 | NSP-interacting kinase 1. NSP-interacting kinase (NIK1), receptor-like kinase, involved in defense response against geminivirus It acts as a virulence target of the begomovirus nuclear shuttle protein (NSP). | 0 |
| RefSeq | XP_051192880.1 | LRR receptor kinase SERL2-like [Lolium perenne] | 0 |
| Q9FP13 | LRR receptor kinase SERL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERL2 PE=1 SV=1 | 0 | |
| TrEMBL | M8C758 | Putative LRR receptor-like serine/threonine-protein kinase OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology