Basic Information
Locus ID:
Pt_Chr0306629
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 204209969 | 204213020 | - | Pt_Chr0306629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 51,436.06 Da | 50.51 | 73.06 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 169 | 441 | 6.18638E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 406 | 441 | 7.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 267 | 302 | 1.0E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 186 | 244 | 6.1E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 318 | 356 | 0.0073 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 149 | 441 | 6.59E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 95 | 444 | 1.6E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 314 | 356 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 179 | 218 | 7.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 302 | 6.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 221 | 259 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 441 | 8.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 359 | 399 | 410.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 409 | 442 | 10.574686 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 270 | 304 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 186 | 227 | 12.346452 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 270 | 311 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 186 | 223 | 9.071966 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 409 | 442 | 12.714052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 289 | 303 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 428 | 442 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_010235849.1 | cell division cycle 20.2, cofactor of APC complex [Brachypodium distachyon] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | I1ICW9 | ANAPC4_WD40 domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100835337 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology