Basic Information
Locus ID:
Pt_Chr0306600
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 202719931 | 202723784 | - | Pt_Chr0306600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 104,614.51 Da | 52.39 | 86.74 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 500 | 542 | 3.42551E-17 | - |
| Pfam | PF04564 | U-box domain | 497 | 567 | 4.9E-10 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 492 | 567 | 1.59E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 496 | 570 | 8.4E-20 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 499 | 563 | 1.0E-21 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 495 | 570 | 31.120939 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 83 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65920.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_047070895.1 | uncharacterized protein LOC124679120 [Lolium rigidum] | 0 |
| D1FP53 | Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula OX=3880 GN=LIN PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6X0D6 | RING-type E3 ubiquitin transferase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35519, jg35520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30054080 |
| Apiaceae | Apium graveolens | 1 | Ag9G01406 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.409.V1.1, AsparagusV1_04.410.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G23193 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2151 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G2242 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.484 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015076 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2074, BH09.2229, CH09.2372 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0306240, gene-QOZ80_4BG0337220 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0196090.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045812 |
| Poaceae | Oryza coarctata | 1 | Oco07G014120 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g49500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G199400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301611, Pt_Chr0306600 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G005580, Chr25G004660, Chr26G013970, Chr30G004520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G773400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG065120, gene_TRIDC2BG069510 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G456200.2, TraesCS2B02G478300.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb054320_P001, Zm00001eb072830_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22666, nbis-gene-5664 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20309, Zma_g21852 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1715, evm.TU.Scaffold_8_RagTag.68 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10286, nbisL1-mrna-19809 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6372 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22638 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000002l.17, add.evm.TU.utg000002l.18 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011815 |
| Salicaceae | Populus euphratica | 2 | populus_peu04395, populus_peu35220 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626006 |
| Solanaceae | Solanum chilense | 1 | SOLCI006667300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026658 |