Basic Information
Locus ID:
Pt_Chr0306571
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 201898533 | 201900113 | - | Pt_Chr0306571 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 58,760.49 Da | 53.51 | 83.76 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 25 | 180 | 4.41121E-22 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 63 | 121 | 2.7E-6 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 340 | 398 | 7.0E-11 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 3 | 337 | 1.8E-94 | IPR007012 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 181 | 337 | 6.02E-56 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 339 | 469 | 2.35E-31 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 4 | 178 | 2.04E-42 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 3 | 336 | 1.5E-134 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 18 | 174 | 1.5E-134 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 340 | 460 | 4.0E-26 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 523 | 4.2E-182 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 507 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_047063756.1 | nuclear poly(A) polymerase 2-like [Lolium rigidum] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453CXM4 | Poly(A) polymerase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology