Basic Information
Locus ID:
Pt_Chr0306402
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 196686119 | 196689491 | + | Pt_Chr0306402 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.32 | 33,354.09 Da | 68.57 | 69.83 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 29 | 152 | 1.58355E-14 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 172 | 246 | 5.9E-18 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 160 | 245 | 6.67E-21 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 29 | 152 | 2.29E-20 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 152 | 270 | 7.7E-25 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 31 | 151 | 2.8E-16 | IPR008974 |
| SMART | SM00225 | BTB_4 | 180 | 281 | 1.7E-6 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 180 | 243 | 15.907503 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 28 | 155 | 10.367698 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 293 | - | - |
| Coils | Coil | Coil | 265 | 292 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G21010.1 | BTB-POZ and MATH domain 5. | 0 |
| RefSeq | XP_051197295.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium perenne] | 0 |
| Q1EBV6 | BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=BPM5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7QNZ2 | BTB/POZ and MATH domain-containing protein 1 OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019886 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306402 |