Basic Information
Locus ID:
Pt_Chr0306376
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 196159164 | 196162150 | + | Pt_Chr0306376 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 41,989.46 Da | 35.50 | 73.51 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 22 | 92 | 8.35369E-35 | - |
| CDD | cd12354 | RRM3_TIA1_like | 226 | 299 | 9.50128E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 106 | 181 | 1.9297E-45 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 22 | 88 | 3.3E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 227 | 293 | 2.2E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 107 | 178 | 1.2E-18 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 211 | 302 | 4.97E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 99 | 191 | 3.09E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 10 | 98 | 4.43E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 99 | 195 | 2.4E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 202 | 305 | 4.5E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 8 | 98 | 2.0E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 226 | 295 | 3.0E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 21 | 90 | 7.8E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 106 | 180 | 0.04 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 106 | 180 | 3.4E-22 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 226 | 295 | 1.1 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 105 | 184 | 17.404068 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 225 | 299 | 15.186867 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 20 | 94 | 15.169811 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_051214960.1 | oligouridylate-binding protein 1-like [Lolium perenne] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | W5CA19 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS1589 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology