Basic Information
Locus ID:
Pt_Chr0306270
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 193303060 | 193307018 | - | Pt_Chr0306270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 47,153.24 Da | 43.18 | 71.94 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 148 | 223 | 1.0747E-45 | - |
| CDD | cd12352 | RRM1_TIA1_like | 64 | 134 | 1.28567E-34 | - |
| CDD | cd12354 | RRM3_TIA1_like | 268 | 341 | 7.72617E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 149 | 220 | 1.5E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 269 | 335 | 2.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 64 | 130 | 4.0E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 141 | 233 | 4.3E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 52 | 140 | 5.24E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 253 | 344 | 6.18E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 141 | 1.6E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 244 | 347 | 5.7E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 142 | 241 | 3.2E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 63 | 132 | 7.8E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 148 | 222 | 3.4E-22 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 268 | 337 | 3.0E-16 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 148 | 222 | 0.04 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 268 | 337 | 1.1 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 147 | 226 | 17.404068 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 267 | 341 | 15.186867 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 62 | 136 | 15.169811 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_051214960.1 | oligouridylate-binding protein 1-like [Lolium perenne] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6C549 | Oligouridylate-binding protein 1B OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology