Basic Information
Locus ID:
Pt_Chr0306044
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 187404013 | 187413293 | + | Pt_Chr0306044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 96,596.73 Da | 50.11 | 82.05 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 533 | 597 | 2.0E-6 | IPR001810 |
| Pfam | PF12937 | F-box-like | 33 | 81 | 2.9E-7 | IPR001810 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 336 | 393 | 2.25E-11 | IPR017946 |
| SUPERFAMILY | SSF52047 | RNI-like | 73 | 256 | 4.63E-11 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 588 | 772 | 3.92E-12 | - |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 330 | 393 | 8.8E-13 | IPR017946 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 608 | 786 | 1.3E-14 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 32 | 76 | 6.0E-10 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 529 | 596 | 2.5E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 91 | 270 | 1.6E-13 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 30 | 79 | 10.159829 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 447 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05490.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_051190065.1 | putative F-box/LRR-repeat protein 23 [Lolium perenne] | 0 |
| Q9M0U6 | Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE=4 SV=1 | 0 | |
| TrEMBL | A0A3B6TP14 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_038003, gene-QYE76_038004 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0306036, Pt_Chr0306038, Pt_Chr0306043, Pt_Chr0306044 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G368300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG025420, gene_TRIDC7BG015750 |
| Poaceae | Triticum aestivum | 2 | TraesCS7D02G203500.1, TraesCS7D02G203600.1 |