Basic Information
Locus ID:
Pt_Chr0306043
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 187369934 | 187372713 | + | Pt_Chr0306043 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 36,153.23 Da | 46.03 | 92.59 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 9 | 57 | 3.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 70 | 3.27E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 94 | 229 | 5.3E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 55 | 241 | 1.1E-20 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 52 | 3.2E-10 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 6 | 55 | 9.894885 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05490.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_051190070.1 | putative F-box/LRR-repeat protein 23 [Lolium perenne] | 0 |
| Q9S9V9 | Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1 | 0 | |
| TrEMBL | A0A3B6TP14 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_038003, gene-QYE76_038004 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0306036, Pt_Chr0306038, Pt_Chr0306043, Pt_Chr0306044 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G368300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG025420, gene_TRIDC7BG015750 |
| Poaceae | Triticum aestivum | 2 | TraesCS7D02G203500.1, TraesCS7D02G203600.1 |