Basic Information
Locus ID:
Pt_Chr0306002
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 186383291 | 186386471 | + | Pt_Chr0306002 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.09 | 53,750.28 Da | 58.83 | 76.65 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 258 | 306 | 4.12236E-15 | - |
| Pfam | PF12906 | RING-variant domain | 258 | 305 | 4.7E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 309 | 3.93E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 242 | 313 | 4.0E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 257 | 306 | 1.1E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 250 | 312 | 19.436893 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 93 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047066429.1 | uncharacterized protein LOC124674424 [Lolium rigidum] | 0 |
| TrEMBL | I1IVY1 | RING-CH-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100836924 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology