Basic Information
Locus ID:
Pt_Chr0305933
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 184881211 | 184883808 | + | Pt_Chr0305933 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 55,668.69 Da | 58.06 | 79.00 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 244 | 292 | 4.22261E-15 | - |
| Pfam | PF12906 | RING-variant domain | 244 | 291 | 4.8E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 240 | 295 | 4.06E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 228 | 299 | 4.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 243 | 292 | 1.1E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 236 | 298 | 19.436893 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 520 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051213056.1 | uncharacterized protein LOC127331009 [Lolium perenne] | 0 |
| TrEMBL | I1IVY1 | RING-CH-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100836924 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology