Basic Information
Locus ID:
Pt_Chr0305692
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 179752699 | 179765237 | + | Pt_Chr0305692 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 212,638.23 Da | 52.73 | 81.29 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1569 | 1964 | 2.10149E-119 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1617 | 1969 | 1.2E-78 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1561 | 1962 | 2.22E-93 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 355 | 760 | 1.5E-31 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 348 | 588 | 4.2E-41 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1510 | 1730 | 9.6E-39 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1840 | 1967 | 1.2E-32 | - |
| SMART | SM00119 | hect_3 | 1583 | 1969 | 3.0E-89 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1593 | 1969 | 56.304348 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1247 | 1263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1079 | 1096 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1204 | 1223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1142 | 1182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 833 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1247 | 1277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1079 | 1187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 833 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_051213258.1 | E3 ubiquitin-protein ligase UPL3-like [Lolium perenne] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6AR18 | HECT-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology