Basic Information
Locus ID:
Pt_Chr0305687
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 179684686 | 179687474 | + | Pt_Chr0305687 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.47 | 26,414.31 Da | 38.02 | 83.71 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 197 | 239 | 2.02693E-19 | - |
| CDD | cd02123 | PA_C_RZF_like | 31 | 148 | 6.20603E-44 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 196 | 239 | 9.0E-13 | IPR001841 |
| Pfam | PF02225 | PA domain | 76 | 137 | 2.3E-9 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 192 | 242 | 2.16E-17 | - |
| SUPERFAMILY | SSF52025 | PA domain | 77 | 153 | 1.83E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 243 | 1.0E-18 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 23 | 152 | 2.3E-27 | - |
| SMART | SM00184 | ring_2 | 197 | 238 | 3.3E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 239 | 12.430266 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_047070041.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like [Lolium rigidum] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D5UWP7 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS524 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology