Basic Information
Locus ID:
Pt_Chr0305667
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 179376236 | 179386833 | - | Pt_Chr0305667 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 146,774.38 Da | 41.70 | 86.85 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00105 | KH-I | 1091 | 1145 | 3.81408E-10 | - |
| CDD | cd18793 | SF2_C_SNF | 754 | 870 | 1.01726E-42 | - |
| CDD | cd00105 | KH-I | 1200 | 1257 | 4.26578E-11 | - |
| CDD | cd00105 | KH-I | 1017 | 1078 | 4.76347E-9 | - |
| Pfam | PF00013 | KH domain | 1201 | 1258 | 9.2E-12 | IPR004088 |
| Pfam | PF00013 | KH domain | 1090 | 1146 | 5.6E-11 | IPR004088 |
| Pfam | PF00013 | KH domain | 1017 | 1079 | 4.4E-9 | IPR004088 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 405 | 665 | 9.1E-42 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 757 | 859 | 6.0E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 377 | 622 | 2.75E-48 | IPR027417 |
| SUPERFAMILY | SSF54791 | Eukaryotic type KH-domain (KH-domain type I) | 1011 | 1085 | 7.89E-12 | IPR036612 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 16 | 336 | 4.16E-48 | IPR036322 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 506 | 904 | 5.49E-48 | IPR027417 |
| SUPERFAMILY | SSF54791 | Eukaryotic type KH-domain (KH-domain type I) | 1189 | 1264 | 4.38E-12 | IPR036612 |
| SUPERFAMILY | SSF54791 | Eukaryotic type KH-domain (KH-domain type I) | 1089 | 1153 | 1.02E-10 | IPR036612 |
| Gene3D | G3DSA:3.30.1370.10 | K Homology domain, type 1 | 1192 | 1288 | 1.2E-14 | IPR036612 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 337 | 8.0E-93 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.10 | K Homology domain, type 1 | 1000 | 1087 | 3.9E-13 | IPR036612 |
| Gene3D | G3DSA:3.40.50.10810 | - | 361 | 621 | 8.3E-59 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 635 | 942 | 1.1E-51 | IPR027417 |
| Gene3D | G3DSA:3.30.1370.10 | K Homology domain, type 1 | 1088 | 1173 | 5.3E-15 | IPR036612 |
| SMART | SM00487 | ultradead3 | 386 | 563 | 5.0E-26 | IPR014001 |
| SMART | SM00322 | kh_6 | 1011 | 1083 | 2.3E-7 | IPR004087 |
| SMART | SM00320 | WD40_4 | 202 | 248 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 295 | 335 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 292 | 1.8E-6 | IPR001680 |
| SMART | SM00490 | helicmild6 | 774 | 859 | 4.2E-18 | IPR001650 |
| SMART | SM00320 | WD40_4 | 50 | 97 | 85.0 | IPR001680 |
| SMART | SM00322 | kh_6 | 1085 | 1150 | 3.6E-12 | IPR004087 |
| SMART | SM00322 | kh_6 | 1197 | 1262 | 3.3E-12 | IPR004087 |
| SMART | SM00320 | WD40_4 | 109 | 149 | 6.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 163 | 199 | 0.16 | IPR001680 |
| ProSiteProfiles | PS50084 | Type-1 KH domain profile. | 1198 | 1257 | 14.906505 | - |
| ProSiteProfiles | PS50084 | Type-1 KH domain profile. | 1086 | 1145 | 13.711602 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 173 | 208 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 116 | 152 | 10.07378 | - |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 755 | 911 | 13.780396 | IPR001650 |
| ProSiteProfiles | PS50084 | Type-1 KH domain profile. | 1012 | 1078 | 13.732566 | - |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 402 | 562 | 19.525215 | IPR014001 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 116 | 158 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 259 | 301 | 9.739832 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 186 | 200 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1162 | 1176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 976 | 1004 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1191 | 1205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 972 | 1004 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1296 | 1319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1259 | 1319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1149 | 1206 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63460.3 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_047071162.1 | protein transport protein SEC31 homolog B-like [Lolium rigidum] | 0 |
| Q8L611 | Protein transport protein SEC31 homolog B OS=Arabidopsis thaliana OX=3702 GN=SEC31B PE=1 SV=1 | 0 | |
| TrEMBL | A0A453AUL6 | Sec16_C domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri15G06539 |
| Poaceae | Echinochloa crus-galli | 1 | CH03.4557 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020038 |
| Poaceae | Oryza coarctata | 1 | Oco03G001780 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g03990.1 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0201384, Pt_Chr0201412, Pt_Chr0201414, Pt_Chr0305667 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19408 |