Basic Information
Locus ID:
Pt_Chr0305651
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 178992865 | 178995059 | - | Pt_Chr0305651 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 53,819.09 Da | 51.45 | 78.35 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 60 | 94 | 8.0E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 60 | 106 | 1.83E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 58 | 96 | 1.7E-7 | - |
| SMART | SM00256 | fbox_2 | 60 | 99 | 1.0E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 179 | 382 | 2.0E-18 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 54 | 99 | 9.947874 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 36 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10340.1 | F-box family protein. | 0 |
| RefSeq | XP_051211142.1 | putative F-box/kelch-repeat protein At1g13200 [Lolium perenne] | 0 |
| Q9LX89 | F-box protein At5g10340 OS=Arabidopsis thaliana OX=3702 GN=At5g10340 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835EE14 | F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_043300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology