Basic Information
Locus ID:
Pt_Chr0305649
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
RdRP
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 178899316 | 178915373 | - | Pt_Chr0305649 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.88 | 263,400.47 Da | 37.29 | 87.17 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 6 | 84 | 5.53004E-4 | - |
| CDD | cd00590 | RRM_SF | 1189 | 1243 | 2.52035E-4 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 1558 | 2129 | 3.3E-182 | IPR007855 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 376 | 947 | 3.3E-176 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 89 | 2.58E-6 | IPR035979 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 88 | 9.405087 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14790.1 | RNA-dependent RNA polymerase 1. Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. | 0 |
| RefSeq | XP_051192789.1 | probable RNA-dependent RNA polymerase 1 [Lolium perenne] | 0 |
| Q9LQV2 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A199VQA1 | RNA-directed RNA polymerase (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_00034 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology