Basic Information
Locus ID:
Pt_Chr0305467
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 174172334 | 174180862 | + | Pt_Chr0305467 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 99,254.10 Da | 47.98 | 77.17 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 197 | 332 | 5.08487E-52 | - |
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 3.49493E-96 | - |
| Pfam | PF16124 | RecQ zinc-binding | 335 | 396 | 1.0E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 174 | 3.0E-21 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 223 | 322 | 3.3E-19 | IPR001650 |
| Pfam | PF14493 | Helix-turn-helix domain | 649 | 743 | 4.3E-16 | IPR029491 |
| Pfam | PF09382 | RQC domain | 400 | 506 | 2.8E-21 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 541 | 606 | 1.2E-12 | IPR002121 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 53 | 337 | 1.55E-53 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 394 | 510 | 2.04E-24 | IPR036390 |
| SUPERFAMILY | SSF47819 | HRDC-like | 534 | 616 | 2.4E-16 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 1.6E-73 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 533 | 613 | 5.1E-15 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 397 | 2.2E-55 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 398 | 520 | 4.7E-35 | IPR036388 |
| SMART | SM00956 | RQC_2 | 403 | 508 | 3.5E-22 | IPR018982 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 7.9E-26 | IPR001650 |
| SMART | SM00487 | ultradead3 | 10 | 205 | 6.5E-32 | IPR014001 |
| SMART | SM00341 | hrdc7 | 538 | 618 | 2.5E-6 | IPR002121 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 5 | 455 | 3.3E-150 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 538 | 618 | 17.463125 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 23.643461 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 216 | 364 | 17.923256 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 796 | 826 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_051213624.1 | uncharacterized protein LOC127331484 [Lolium perenne] | 0 |
| P71359 | ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A453ANK8 | ATP-dependent DNA helicase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology