Basic Information
Locus ID:
Pt_Chr0305333
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 170596635 | 170602080 | + | Pt_Chr0305333 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 128,130.54 Da | 43.19 | 80.95 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05183 | RNA dependent RNA polymerase | 389 | 970 | 6.5E-175 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 5 | 76 | 5.84E-6 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 5 | 96 | 2.8E-5 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 10 | 95 | 9.405087 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1144 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_051217726.1 | probable RNA-dependent RNA polymerase 2 isoform X1 [Lolium perenne] | 0 |
| Q7XM31 | Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6HU92 | RNA-dependent RNA polymerase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology