Basic Information
Locus ID:
Pt_Chr0305307
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 169766975 | 169769300 | - | Pt_Chr0305307 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 63,807.77 Da | 30.38 | 84.53 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 399 | 581 | 3.07089E-86 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 40 | 201 | 5.01735E-93 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 234 | 351 | 3.3E-19 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 37 | 205 | 3.3E-37 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 444 | 569 | 5.6E-13 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 399 | 593 | 7.86E-39 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 37 | 211 | 3.82E-46 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 229 | 376 | 8.41E-31 | IPR029035 |
| Gene3D | G3DSA:3.40.50.970 | - | 33 | 210 | 6.9E-63 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 394 | 580 | 4.2E-54 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 224 | 386 | 3.9E-41 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 31 | 593 | 4.6E-212 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_051213461.1 | pyruvate decarboxylase 2-like isoform X2 [Lolium perenne] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | F2E9S9 | pyruvate decarboxylase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology