Basic Information
Locus ID:
Pt_Chr0305305
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
defense response to oomycetes
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 169692992 | 169695378 | + | Pt_Chr0305305 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 66,052.10 Da | 42.15 | 93.10 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 46 | 306 | 2.0E-43 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 380 | 523 | 6.0E-8 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 29 | 315 | 2.56E-67 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 380 | 587 | 1.5E-24 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 115 | 324 | 1.1E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 17 | 114 | 6.3E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 451 | 533 | 2.0E-9 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 366 | 450 | 7.6E-12 | - |
| SMART | SM00220 | serkin_6 | 42 | 315 | 7.6E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 376 | 596 | 12.414613 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 42 | 315 | 35.820515 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 48 | 70 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 158 | 170 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16120.1 | wall associated kinase-like 1. wall-associated kinase like | 0 |
| RefSeq | XP_044318596.1 | probable serine/threonine-protein kinase At1g01540 [Triticum aestivum] | 0 |
| Q9S9M5 | Wall-associated receptor kinase-like 1 OS=Arabidopsis thaliana OX=3702 GN=WAKL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6DPL2 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0204190.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_057925, gene-QYE76_067578 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305296, Pt_Chr0305305 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G866100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG071750, gene_TRIDC2BG077610 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G510000.1, TraesCS2A02G510300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb135120_P001 |