Basic Information
Locus ID:
Pt_Chr0305205
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 167051102 | 167054405 | - | Pt_Chr0305205 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 38,057.87 Da | 51.84 | 78.99 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 232 | 278 | 5.9E-6 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 225 | 284 | 1.41E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 218 | 333 | 5.1E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 232 | 280 | 6.7E-7 | IPR001841 |
| ProSiteProfiles | PS51382 | SPX domain profile. | 1 | 164 | 13.655087 | IPR004331 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 232 | 281 | 12.164712 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02860.1 | SPX (SYG1/Pho81/XPR1) domain-containing protein. Encodes a likely ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses. Targeted by MIR827. | 0 |
| RefSeq | XP_047070281.1 | probable E3 ubiquitin-protein ligase BAH1-like 1 isoform X1 [Lolium rigidum] | 0 |
| B8B5U8 | Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_27296 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2X0SE27 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS986 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35188, jg8885 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5208 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah027617, Ah029524 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g129040, BVRB_7g164730 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1364, Sbi_jg35217 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3364 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003541 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73704, Sgl77205 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000001190, gene:ENSEOMG00000007767 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0026950, CQ.Regalona.r1.6BG0028340 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30009180, pistato.v30088540 |
| Apiaceae | Apium graveolens | 2 | Ag10G01823, Ag2G02530 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G001830, COCNU_04G009880, COCNU_16G003510 |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103707247, gene-LOC103715294, gene-LOC103723470 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.940.V1.1, AsparagusV1_07.974.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G27427 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G02860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008149m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g01840.v2.2, Sp1g01850.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g000090.2N, BniB02g000360.2N, BniB03g038310.2N |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq05G1191, Ceq05G1193, Ceq06G0952, Ceq07G2270 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1203, Cgl06G0978 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6261, nbisL1-mrna-9624 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.345 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00022806, Pov_00024865, Pov_00024866 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G07550, Lb5G26697, Lb8G36417, Lb8G36422 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.4033, BH03.4367, CH07.148 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0581440, gene-QOZ80_7BG0612530 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0113540.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_038831, gene-QYE76_038832 |
| Poaceae | Oryza coarctata | 1 | Oco14G016370 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g47590.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G386300 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0305205, Pt_Chr0305248, Pt_Chr0404616, Pt_Chr0404622 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G002660, Chr0G003410, Chr24G012610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G242500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG013640, gene_TRIDC2BG016470 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G112800.1, TraesCS2B02G131600.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33223 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5766 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.136, evm.TU.LG03.827, evm.TU.LG04.619 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g32460 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.870 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11475, nbisL1-mrna-21411 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10151, nbisL1-mrna-8545 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11495, nbisL1-mrna-18483 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.586, evm.TU.utg000006l.224 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009582, Maker00013004 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10078, nbisL1-mrna-1565 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7489 |
| Salicaceae | Populus euphratica | 3 | populus_peu27246, populus_peu27254, populus_peu31233 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608919 |
| Solanaceae | Solanum chilense | 1 | SOLCI001155100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029754 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_16107, gene_16108, gene_7074 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0361, TC09G0616 |
| Zosteraceae | Zostera marina | 1 | Zosma557g00060.v3.1 |